Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   WHP87_RS03140 Genome accession   NZ_CP148222
Coordinates   604775..605158 (+) Length   127 a.a.
NCBI ID   WP_002918422.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0047     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 599775..610158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP87_RS03120 (WHP87_03120) - 599854..601788 (-) 1935 WP_167843424.1 ribonuclease R family protein -
  WHP87_RS03125 (WHP87_03125) ilvC 601907..602929 (+) 1023 WP_167843425.1 ketol-acid reductoisomerase -
  WHP87_RS03130 (WHP87_03130) - 602933..604015 (+) 1083 WP_060806472.1 divergent polysaccharide deacetylase family protein -
  WHP87_RS03135 (WHP87_03135) dprA 604005..604778 (+) 774 WP_060806473.1 DNA-processing protein DprA Machinery gene
  WHP87_RS03140 (WHP87_03140) dprB 604775..605158 (+) 384 WP_002918422.1 Holliday junction resolvase RuvX Machinery gene
  WHP87_RS03145 (WHP87_03145) - 605187..606026 (+) 840 WP_079264558.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHP87_RS03150 (WHP87_03150) msrA 606202..606699 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHP87_RS03155 (WHP87_03155) ppa 606741..607259 (-) 519 WP_002867724.1 inorganic diphosphatase -
  WHP87_RS03160 (WHP87_03160) adk 607269..607847 (-) 579 WP_032590860.1 adenylate kinase -
  WHP87_RS03165 (WHP87_03165) aspS 607844..609595 (-) 1752 WP_060806474.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14188.71 Da        Isoelectric Point: 9.0848

>NTDB_id=868238 WHP87_RS03140 WP_002918422.1 604775..605158(+) (dprB) [Campylobacter jejuni strain Z1323CCJ0047]
MRALALDIGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGIANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=868238 WHP87_RS03140 WP_002918422.1 604775..605158(+) (dprB) [Campylobacter jejuni strain Z1323CCJ0047]
ATGAGAGCTTTGGCTTTAGATATAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGAATACGGCATAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449