Detailed information NTG0868171

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: RAK11_RS19580
• Genome accession: NZ_CP132332
• Coordinates: 4137497..4138696 (-)
• Length: 399 a.a.
• NCBI ID: WP_033455490.1
• Uniprot ID: -
• Organism: Bordetella bronchiseptica strain RL57
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4132497..4143696

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RAK11_RS19560 (RAK11_19560)	phnC	4133138..4133908 (+)	771	WP_003808589.1	phosphonate ABC transporter ATP-binding protein	-
RAK11_RS19565 (RAK11_19565)	phnE	4133926..4134795 (+)	870	WP_172452875.1	phosphonate ABC transporter, permease protein PhnE	-
RAK11_RS19570 (RAK11_19570)	phnE	4134792..4135613 (+)	822	WP_003808584.1	phosphonate ABC transporter, permease protein PhnE	-
RAK11_RS19575 (RAK11_19575)	-	4135852..4137450 (+)	1599	WP_003808580.1	CYTH and CHAD domain-containing protein	-
RAK11_RS19580 (RAK11_19580)	pilA	4137497..4138696 (-)	1200	WP_033455490.1	signal recognition particle-docking protein FtsY	Machinery gene
RAK11_RS19585 (RAK11_19585)	rsmD	4138772..4139392 (+)	621	WP_003808577.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
RAK11_RS19590 (RAK11_19590)	coaD	4139413..4139922 (+)	510	WP_003808574.1	pantetheine-phosphate adenylyltransferase	-
RAK11_RS19595 (RAK11_19595)	-	4139977..4140228 (+)	252	WP_003808570.1	YfhL family 4Fe-4S dicluster ferredoxin	-
RAK11_RS19600 (RAK11_19600)	-	4140225..4141442 (+)	1218	WP_003808568.1	benzoate/H(+) symporter BenE family transporter	-
RAK11_RS19605 (RAK11_19605)	-	4141450..4141836 (-)	387	WP_003808567.1	MOSC N-terminal beta barrel domain-containing protein	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 41665.64 Da
• Isoelectric Point: 5.5094

>NTDB_id=868171 RAK11_RS19580 WP_033455490.1 4137497..4138696(-) (pilA) [Bordetella bronchiseptica strain RL57]
MFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPAPMPAPQPEPQPEPQPQQPPEPAPPAMASPPVAEPQPS
VAEPQPPVAAAPEAPRKASWLSRLKQGLSRTGQNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKE
RIDDPAQVKTALRQLLADHLRPLERSFDLGRAQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQ
LVEWGSRNNVTVISQDGGDPAAVAFDSVNAGRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVD
GNTGQNALAQIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD

Nucleotide

• Length: 1200 bp

>NTDB_id=868171 RAK11_RS19580 WP_033455490.1 4137497..4138696(-) (pilA) [Bordetella bronchiseptica strain RL57]
ATGTTCAGCTTCTTCAAGAAAAAATCCCCTCCGCCCGCCGCGCCGGCCCAGCCCGCGCCGCCGCCGGAGGCAGTGGACGC
AGGGTCAGCCGCACCTGCGCAGCCTCAACCCGCCGAGCCGCAACCGGCCCCGATGCCGGCCCCCCAGCCCGAGCCGCAGC
CCGAGCCGCAGCCGCAACAACCGCCCGAGCCGGCGCCGCCGGCCATGGCGTCGCCGCCTGTCGCCGAGCCGCAGCCATCT
GTCGCCGAGCCGCAGCCACCGGTCGCGGCCGCGCCCGAGGCGCCCCGCAAGGCCTCGTGGCTGAGCCGGCTCAAACAGGG
CCTGTCGCGCACCGGCCAGAACATCGGCGGGCTGTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTGGAGT
CGGCGCTGATCATGGCCGACGCGGGCATCGAGGCCACCGAGAAACTGCTGGCCGCGCTGCGCGCGCGCGTCAAGAAAGAG
CGCATCGACGATCCGGCGCAGGTCAAGACGGCGCTGCGCCAATTGCTGGCCGACCATCTGCGGCCGCTGGAGCGGTCCTT
CGACCTGGGGCGGGCCCAGCCCCTGGTGGTCATGATTGCCGGCGTCAACGGCGCGGGCAAGACGACCTCGATCGGCAAGC
TGGCGCATACCTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGCGGCCGGGGACACCTTCCGCGCGGCGGCGCGCGAGCAA
TTGGTCGAATGGGGCAGCCGCAACAATGTGACCGTGATCTCGCAGGATGGCGGCGATCCGGCCGCGGTGGCGTTCGACTC
GGTCAATGCCGGACGTGCGCGCAACGTGGGCGTGGTGATGGTGGATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGA
TGGAAGAATTGAAGAAGATCCGCCGCGTCATCGGCAAGGCCGAGGCCAGCGCGCCGCATGAAGTGCTGCTGGTGGTCGAT
GGCAACACCGGCCAGAACGCGCTGGCGCAAATCCGCGCCTTCGACGCCGCCATCACCCTCACCGGCCTGGTCGTCACCAA
GCTGGACGGCACCGCCAAGGGCGGCACGCTGGCGGCCGTGGCCGCCGGCAGCCAGGGCGTGCGGCCCATCCCGGTCTATT
GGATCGGCGTGGGCGAGGGGTTGGAGGACCTGCAGCCCTTCGTGGCCGACGAGTTCGCCGCCGCCCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (115-174)

• SRP54-type protein, GTPase domain (SRP54) (195-397)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.7	100	0.516