Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RAK11_RS08515 Genome accession   NZ_CP132332
Coordinates   1812386..1813888 (+) Length   500 a.a.
NCBI ID   WP_010926358.1    Uniprot ID   A0A0H3LRL0
Organism   Bordetella bronchiseptica strain RL57     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1807386..1818888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAK11_RS08500 (RAK11_08500) amt 1809702..1810940 (-) 1239 WP_306220605.1 ammonium transporter -
  RAK11_RS08505 (RAK11_08505) - 1810966..1811304 (-) 339 WP_003812839.1 P-II family nitrogen regulator -
  RAK11_RS08510 (RAK11_08510) - 1812013..1812279 (+) 267 WP_010931105.1 accessory factor UbiK family protein -
  RAK11_RS08515 (RAK11_08515) comM 1812386..1813888 (+) 1503 WP_010926358.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RAK11_RS08520 (RAK11_08520) rpmI 1814224..1814421 (+) 198 WP_003812834.1 50S ribosomal protein L35 -
  RAK11_RS08525 (RAK11_08525) rplT 1814437..1814796 (+) 360 WP_003812832.1 50S ribosomal protein L20 -
  RAK11_RS08530 (RAK11_08530) pheS 1814871..1815893 (+) 1023 WP_010926359.1 phenylalanine--tRNA ligase subunit alpha -
  RAK11_RS08535 (RAK11_08535) pheT 1815906..1818323 (+) 2418 WP_010926360.1 phenylalanine--tRNA ligase subunit beta -
  RAK11_RS08540 (RAK11_08540) - 1818329..1818670 (+) 342 WP_003812826.1 integration host factor subunit alpha -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 52207.25 Da        Isoelectric Point: 8.8352

>NTDB_id=868162 RAK11_RS08515 WP_010926358.1 1812386..1813888(+) (comM) [Bordetella bronchiseptica strain RL57]
MTLAVLASRAIAGWQAPAVRVETHLGSGLPAFAIVGLPDVEVRESRERVRAAIQNSGFDFPPGRITVNLSPADLPKASAR
FDLPIALGILLASGQVAASAAQTAALPDCVWAAELSLSGALVPLAAPLALALAVAREQPGATLVLPAGSAAVAAWVPGIR
VLAAHTLGEAAAYLAGHAELAPAERRSWPEAEPGPCLSDVRGQPAARRALEVAAAGGHSLLMCGPPGAGKSMLAQRLPGL
LPPLEQRQALEVAAIAGAGGAPEVLRGQPPFRAPHHSASAAALVGGGARPRPGEISLAHHGVLFLDELPEFERRALESLR
EPLETGKVVISRALHSVEYPAVFQLVAAMNPCPCGWRGHASKACRCTPDQVRRYAARVSGPLVDRIDLWIELPATEPQWL
AEPPGEPSLPVRERVARCRQRQLARQGCLNAKLSGPALDAHCALGAAARTLLQQAMRRLGGSARAAHRALRVARTLADLA
HEPEIGAAHIAEAVQYRRPT

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=868162 RAK11_RS08515 WP_010926358.1 1812386..1813888(+) (comM) [Bordetella bronchiseptica strain RL57]
ATGACCCTGGCCGTATTGGCCAGCCGGGCGATCGCCGGCTGGCAGGCGCCCGCCGTGCGCGTCGAGACCCATCTGGGCAG
CGGCCTGCCCGCTTTTGCCATCGTCGGGCTGCCCGACGTCGAGGTCCGCGAAAGCCGCGAACGGGTGAGGGCGGCCATCC
AGAACAGCGGCTTCGATTTCCCGCCCGGCCGCATTACCGTCAACCTGTCGCCCGCCGACCTGCCCAAGGCCTCGGCGCGC
TTCGATTTGCCCATTGCGCTGGGTATCCTGCTGGCCAGCGGCCAGGTGGCCGCCAGCGCCGCGCAAACGGCGGCGCTGCC
CGATTGCGTGTGGGCGGCCGAACTGTCGCTGTCGGGCGCCCTGGTGCCGCTGGCCGCGCCCTTGGCCCTGGCGCTGGCCG
TGGCACGCGAGCAGCCGGGTGCGACGCTGGTGCTGCCGGCTGGCAGCGCCGCCGTGGCCGCATGGGTGCCGGGCATCCGG
GTGCTGGCTGCCCATACGCTGGGCGAGGCGGCGGCGTACCTGGCCGGGCACGCCGAGCTGGCGCCGGCCGAGCGCCGCAG
CTGGCCCGAGGCCGAACCCGGTCCGTGCCTGTCCGACGTGCGGGGCCAGCCGGCTGCCCGGCGCGCCTTGGAAGTGGCGG
CCGCCGGCGGCCACAGCCTCTTGATGTGCGGGCCGCCCGGGGCGGGCAAAAGCATGCTGGCGCAACGCCTGCCGGGCCTG
CTGCCGCCGCTGGAGCAGCGCCAGGCGCTGGAGGTGGCGGCCATCGCGGGCGCCGGCGGGGCGCCCGAGGTCCTGCGCGG
CCAGCCGCCGTTCCGGGCCCCGCATCACTCCGCCTCGGCCGCCGCCCTGGTGGGCGGCGGCGCCAGGCCTCGCCCGGGCG
AGATCAGCCTGGCGCACCATGGCGTGCTGTTCCTGGACGAACTGCCCGAGTTCGAGCGTCGCGCCCTGGAGTCCCTGCGC
GAGCCGCTGGAGACCGGCAAGGTCGTCATCTCCCGGGCGCTGCACAGCGTCGAGTATCCCGCCGTATTCCAGCTGGTTGC
GGCCATGAATCCGTGCCCCTGCGGCTGGCGCGGGCATGCGTCGAAGGCCTGCCGCTGCACGCCGGACCAGGTGCGCCGCT
ATGCGGCGCGCGTGTCCGGGCCGCTGGTCGATCGCATAGACCTGTGGATCGAGCTGCCCGCCACCGAGCCGCAGTGGCTG
GCCGAACCGCCGGGCGAGCCCTCCCTTCCGGTGCGCGAGCGCGTGGCGCGCTGCCGCCAGCGGCAGTTGGCCCGCCAGGG
CTGCCTGAACGCCAAGCTGTCCGGCCCGGCGCTCGATGCGCATTGCGCCCTGGGCGCCGCGGCCCGCACGCTGCTGCAGC
AGGCCATGCGGCGCCTGGGCGGCTCGGCGCGCGCCGCCCATCGCGCGCTCAGGGTGGCGCGCACCCTGGCCGACCTCGCG
CACGAGCCGGAGATCGGCGCCGCCCATATCGCCGAAGCGGTACAGTACCGCCGTCCCACGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-147)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(197-397)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3LRL0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.907

100

0.492
  comM Vibrio campbellii strain DS40M4

48.207

100

0.484
  comM Legionella pneumophila strain ERS1305867

45.312

100

0.464
  comM Legionella pneumophila str. Paris

45.312

100

0.464
  comM Haemophilus influenzae Rd KW20

45.562

100

0.462
  comM Glaesserella parasuis strain SC1401

45.079

100

0.458
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.157

100

0.43