Detailed information NTG0868156

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: RAK14_RS19570
• Genome accession: NZ_CP132330
• Coordinates: 4137831..4139030 (-)
• Length: 399 a.a.
• NCBI ID: WP_033455490.1
• Uniprot ID: -
• Organism: Bordetella bronchiseptica strain XX35
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4132831..4144030

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RAK14_RS19550 (RAK14_19545)	phnC	4133472..4134242 (+)	771	WP_003808589.1	phosphonate ABC transporter ATP-binding protein	-
RAK14_RS19555 (RAK14_19550)	phnE	4134260..4135129 (+)	870	WP_172452875.1	phosphonate ABC transporter, permease protein PhnE	-
RAK14_RS19560 (RAK14_19555)	phnE	4135126..4135947 (+)	822	WP_003808584.1	phosphonate ABC transporter, permease protein PhnE	-
RAK14_RS19565 (RAK14_19560)	-	4136186..4137784 (+)	1599	WP_003808580.1	CYTH and CHAD domain-containing protein	-
RAK14_RS19570 (RAK14_19565)	pilA	4137831..4139030 (-)	1200	WP_033455490.1	signal recognition particle-docking protein FtsY	Machinery gene
RAK14_RS19575 (RAK14_19570)	rsmD	4139106..4139726 (+)	621	WP_003808577.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
RAK14_RS19580 (RAK14_19575)	coaD	4139747..4140256 (+)	510	WP_003808574.1	pantetheine-phosphate adenylyltransferase	-
RAK14_RS19585 (RAK14_19580)	-	4140311..4140562 (+)	252	WP_003808570.1	YfhL family 4Fe-4S dicluster ferredoxin	-
RAK14_RS19590 (RAK14_19585)	-	4140559..4141776 (+)	1218	WP_003808568.1	benzoate/H(+) symporter BenE family transporter	-
RAK14_RS19595 (RAK14_19590)	-	4141784..4142170 (-)	387	WP_003808567.1	MOSC N-terminal beta barrel domain-containing protein	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 41665.64 Da
• Isoelectric Point: 5.5094

>NTDB_id=868156 RAK14_RS19570 WP_033455490.1 4137831..4139030(-) (pilA) [Bordetella bronchiseptica strain XX35]
MFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPAPMPAPQPEPQPEPQPQQPPEPAPPAMASPPVAEPQPS
VAEPQPPVAAAPEAPRKASWLSRLKQGLSRTGQNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKE
RIDDPAQVKTALRQLLADHLRPLERSFDLGRAQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQ
LVEWGSRNNVTVISQDGGDPAAVAFDSVNAGRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVD
GNTGQNALAQIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD

Nucleotide

• Length: 1200 bp

>NTDB_id=868156 RAK14_RS19570 WP_033455490.1 4137831..4139030(-) (pilA) [Bordetella bronchiseptica strain XX35]
ATGTTCAGCTTCTTCAAGAAAAAATCCCCTCCGCCCGCCGCGCCGGCCCAGCCCGCGCCGCCGCCGGAGGCAGTGGACGC
AGGGTCAGCCGCACCTGCGCAGCCTCAACCCGCCGAGCCGCAACCGGCCCCGATGCCGGCCCCCCAGCCCGAGCCGCAGC
CCGAGCCGCAGCCGCAACAACCGCCCGAGCCGGCGCCGCCGGCCATGGCGTCGCCGCCTGTCGCCGAGCCGCAGCCATCT
GTCGCCGAGCCGCAGCCACCGGTCGCGGCCGCGCCCGAGGCGCCCCGCAAGGCCTCGTGGCTGAGCCGGCTCAAACAGGG
CCTGTCGCGCACCGGCCAGAACATCGGCGGGCTGTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTGGAGT
CGGCGCTGATCATGGCCGACGCGGGCATCGAGGCCACCGAGAAACTGCTGGCCGCGCTGCGCGCGCGCGTCAAGAAAGAG
CGCATCGACGATCCGGCGCAGGTCAAGACGGCGCTGCGCCAATTGCTGGCCGACCATCTGCGGCCGCTGGAGCGGTCCTT
CGACCTGGGGCGGGCCCAGCCCCTGGTGGTCATGATTGCCGGCGTCAACGGCGCGGGCAAGACGACCTCGATCGGCAAGC
TGGCGCATACCTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGCGGCCGGGGACACCTTCCGCGCGGCGGCGCGCGAGCAA
TTGGTCGAATGGGGCAGCCGCAACAATGTGACCGTGATCTCGCAGGATGGCGGCGATCCGGCCGCGGTGGCGTTCGACTC
GGTCAATGCCGGACGTGCGCGCAACGTGGGCGTGGTGATGGTGGATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGA
TGGAAGAATTGAAGAAGATCCGCCGCGTCATCGGCAAGGCCGAGGCCAGCGCGCCGCATGAAGTGCTGCTGGTGGTCGAT
GGCAACACCGGCCAGAACGCGCTGGCGCAAATCCGCGCCTTCGACGCCGCCATCACCCTCACCGGCCTGGTCGTCACCAA
GCTGGACGGCACCGCCAAGGGCGGCACGCTGGCGGCCGTGGCCGCCGGCAGCCAGGGCGTGCGGCCCATCCCGGTCTATT
GGATCGGCGTGGGCGAGGGGTTGGAGGACCTGCAGCCCTTCGTGGCCGACGAGTTCGCCGCCGCCCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (115-174)

• SRP54-type protein, GTPase domain (SRP54) (195-397)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.7	100	0.516