Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Q8X41_RS12245 Genome accession   NZ_CP132291
Coordinates   2484628..2486004 (-) Length   458 a.a.
NCBI ID   WP_397536599.1    Uniprot ID   -
Organism   Rummeliibacillus pycnus strain X33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2479628..2491004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8X41_RS12225 gltX 2480616..2482076 (-) 1461 WP_397536595.1 glutamate--tRNA ligase -
  Q8X41_RS12230 ispF 2482155..2482631 (-) 477 WP_397536596.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  Q8X41_RS12235 ispD 2482634..2483320 (-) 687 WP_397536597.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  Q8X41_RS12240 - 2483396..2484493 (-) 1098 WP_397536598.1 PIN/TRAM domain-containing protein -
  Q8X41_RS12245 radA 2484628..2486004 (-) 1377 WP_397536599.1 DNA repair protein RadA Machinery gene
  Q8X41_RS12250 - 2486123..2488561 (-) 2439 WP_397536600.1 ATP-dependent Clp protease ATP-binding subunit -
  Q8X41_RS12255 - 2488590..2489669 (-) 1080 WP_397536601.1 protein arginine kinase -
  Q8X41_RS12260 - 2489659..2490225 (-) 567 WP_397536602.1 UvrB/UvrC motif-containing protein -
  Q8X41_RS12265 - 2490239..2490709 (-) 471 WP_397536603.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50479.24 Da        Isoelectric Point: 7.6775

>NTDB_id=868019 Q8X41_RS12245 WP_397536599.1 2484628..2486004(-) (radA) [Rummeliibacillus pycnus strain X33]
MVKKKTKFFCNSCGYESPKWLGRCPGCGEWNTMVEEVEVVSKGPRGAFQHSTNVSQKATPIISVESEEAPRIETELKELN
RVLGGGVVPGSLILIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESVRQTKLRAERLGVKSPELYIYSETNLEFLNQ
TIEEVQPKFVIVDSIQTVYHPNVTSAPGSVSQVRECTAEFMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHTYRILRSQKNRFGSTNEIAIFEMLQNGLKEVLNPSELFLQERSQGTPGSTVVASMEGTRPILVEIQALVTPSSFN
YPKRMATGVDQNRISLLMAVLEKRMGMLLQAQDAYIKVAGGVKLDEPAIDLAVLVSIVSSFKDIAAKPMDCYIGEVGLTG
EVRRVSRIEQRVQEAAKLGFKRAIIPASNLGGWDYPSDIEVLGVDTVNQALKLSFKEL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=868019 Q8X41_RS12245 WP_397536599.1 2484628..2486004(-) (radA) [Rummeliibacillus pycnus strain X33]
ATGGTTAAAAAGAAAACGAAATTCTTTTGTAATTCATGTGGTTACGAATCACCAAAATGGTTAGGAAGATGTCCTGGGTG
TGGGGAATGGAACACGATGGTTGAAGAAGTTGAAGTCGTTTCTAAAGGGCCTAGAGGAGCATTCCAACATTCTACAAACG
TCTCGCAAAAGGCAACACCTATTATTTCTGTAGAATCAGAAGAAGCCCCAAGAATAGAGACGGAACTTAAAGAATTAAAT
CGCGTCCTAGGAGGTGGAGTGGTTCCAGGTTCACTTATCTTAATCGGAGGGGATCCGGGTATCGGTAAATCCACGTTATT
ACTACAGGTATCTGCGTTACTATCCAATAAAGGTCACCGAGTTCTTTATATTTCAGGGGAGGAATCTGTTCGTCAAACTA
AGTTACGAGCAGAACGACTTGGAGTCAAATCTCCGGAACTTTATATTTACTCGGAAACCAATTTAGAATTTTTAAACCAA
ACGATTGAAGAAGTTCAACCAAAGTTTGTTATTGTGGATTCAATTCAAACTGTATACCATCCAAATGTGACAAGTGCACC
AGGAAGTGTATCTCAAGTTCGTGAATGTACTGCGGAATTTATGAGAATTGCAAAGACAAAGAATATTGCCATTTTCCTTG
TTGGACATGTAACGAAGGAGGGGCAAATTGCTGGCCCCCGTATTTTAGAACATATGGTAGATACCGTGTTGTATTTTGAA
GGTGAACGTCATCATACTTATCGAATTTTACGTAGTCAAAAAAATCGTTTTGGTTCTACGAATGAGATTGCCATTTTTGA
AATGTTGCAGAATGGTTTAAAAGAAGTGTTAAATCCCTCAGAGTTGTTTCTGCAAGAACGATCTCAAGGCACACCAGGTT
CAACCGTTGTTGCATCTATGGAAGGGACACGCCCAATCTTAGTAGAAATTCAAGCGCTTGTAACACCATCAAGCTTTAAC
TATCCAAAAAGAATGGCAACAGGTGTTGATCAGAACCGAATCTCCTTGTTAATGGCTGTATTAGAAAAAAGAATGGGTAT
GTTACTACAAGCTCAGGATGCTTATATTAAAGTGGCTGGTGGAGTAAAGTTAGACGAACCTGCAATTGATTTGGCTGTAT
TAGTAAGTATTGTTTCTAGTTTTAAAGATATTGCTGCAAAACCAATGGATTGCTATATTGGCGAGGTAGGTTTAACAGGT
GAGGTACGTCGTGTTTCCCGTATTGAACAGCGTGTGCAAGAAGCTGCTAAATTAGGTTTTAAACGCGCTATTATACCAGC
ATCTAATTTAGGTGGTTGGGATTATCCAAGTGACATTGAGGTGCTTGGTGTAGATACTGTGAATCAAGCATTAAAGTTGA
GCTTTAAGGAATTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

AAA domain (AAA_25)

(68-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.179

100

0.712
  radA Streptococcus pneumoniae Rx1

62.637

99.345

0.622
  radA Streptococcus pneumoniae D39

62.637

99.345

0.622
  radA Streptococcus pneumoniae R6

62.637

99.345

0.622
  radA Streptococcus pneumoniae TIGR4

62.637

99.345

0.622
  radA Streptococcus mitis NCTC 12261

62.637

99.345

0.622
  radA Streptococcus mitis SK321

62.637

99.345

0.622