Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   Q8X41_RS11215 Genome accession   NZ_CP132291
Coordinates   2298948..2299898 (-) Length   316 a.a.
NCBI ID   WP_397536427.1    Uniprot ID   -
Organism   Rummeliibacillus pycnus strain X33     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2293948..2304898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8X41_RS11190 - 2294245..2295450 (+) 1206 WP_397536422.1 MFS transporter -
  Q8X41_RS11195 - 2295495..2296103 (-) 609 WP_397536423.1 phosphatase PAP2 family protein -
  Q8X41_RS11200 - 2296250..2297230 (-) 981 WP_397536424.1 siderophore ABC transporter substrate-binding protein -
  Q8X41_RS11205 - 2297247..2298008 (-) 762 WP_397536425.1 ABC transporter ATP-binding protein -
  Q8X41_RS11210 - 2298005..2298955 (-) 951 WP_397536426.1 iron chelate uptake ABC transporter family permease subunit -
  Q8X41_RS11215 ceuB 2298948..2299898 (-) 951 WP_397536427.1 ABC transporter permease Machinery gene
  Q8X41_RS11220 - 2300279..2301766 (-) 1488 WP_397536428.1 peptide MFS transporter -
  Q8X41_RS11225 hflX 2302223..2303491 (-) 1269 WP_397536429.1 GTPase HflX -
  Q8X41_RS11230 - 2303652..2304344 (-) 693 WP_397536430.1 VOC family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34859.21 Da        Isoelectric Point: 10.3384

>NTDB_id=868018 Q8X41_RS11215 WP_397536427.1 2298948..2299898(-) (ceuB) [Rummeliibacillus pycnus strain X33]
MKKRYLFLALVVLSIVSLFVGVTDISPKDLLNIHSEKTQIFLISRVPRLIAIILAGFGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGILVSMLLFANASMLEKMAVSFVFALVGTLLFMQILDRIKFKDAIFIPLVGLMFGNILSSITTFFAYKSNVI
QNISTWLQGDFSMIMKGRYELLYISVPVLIIAYFYANRFTVAGMGEDFAKNLGLAYKRIVNFGLILVALVTTTVVLTVGM
IPFLGLIIPNIVSIFKGDHLQKTLPHTALLGAIFLLICDILGRVLIYPYEISISLMVGVIGSAVFLFLLFRGRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=868018 Q8X41_RS11215 WP_397536427.1 2298948..2299898(-) (ceuB) [Rummeliibacillus pycnus strain X33]
ATGAAGAAACGATATTTATTTTTAGCGCTGGTTGTCTTATCAATCGTATCTCTCTTCGTAGGGGTAACGGATATATCACC
AAAGGATTTACTCAATATTCATTCAGAGAAAACACAAATCTTCCTTATTAGTCGTGTACCTAGGTTAATCGCGATTATCT
TAGCAGGGTTTGGTATGAGCATTGCGGGCTTAATCATGCAAAGCTTAAGCCGCAATAAGTTCGTGTCACCTACAACGGCT
GGAACATTAGATGCCACTCGTTTAGGAATTCTTGTATCGATGCTGTTATTTGCTAACGCTTCGATGTTGGAAAAAATGGC
TGTATCATTTGTATTTGCATTAGTCGGCACACTATTATTTATGCAAATTTTGGACCGTATTAAATTTAAGGACGCAATCT
TTATTCCGCTAGTTGGGTTAATGTTTGGAAATATTTTATCTTCTATTACAACTTTCTTCGCCTATAAGTCGAACGTTATC
CAGAATATTTCGACTTGGTTGCAGGGGGATTTTTCAATGATTATGAAAGGTCGCTATGAATTGCTCTATATTAGTGTTCC
AGTATTAATCATTGCCTATTTCTATGCAAATCGTTTTACAGTTGCGGGGATGGGGGAAGATTTTGCAAAGAACTTAGGGC
TAGCCTATAAGCGTATCGTCAATTTTGGTTTAATCCTCGTAGCTTTAGTGACTACTACTGTTGTGCTCACAGTAGGCATG
ATTCCATTTTTAGGTTTGATCATCCCGAACATTGTTTCCATTTTTAAAGGAGATCATTTACAAAAGACTTTACCGCATAC
TGCATTGCTAGGAGCAATCTTCCTATTGATTTGTGATATTTTAGGACGTGTGTTGATTTATCCATATGAGATTTCGATTA
GCTTAATGGTAGGCGTTATCGGCAGTGCGGTCTTCCTATTCTTGTTGTTTAGGGGGAGAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.072

97.152

0.525