Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   Q8X41_RS05465 Genome accession   NZ_CP132291
Coordinates   1101211..1102908 (-) Length   565 a.a.
NCBI ID   WP_397539245.1    Uniprot ID   -
Organism   Rummeliibacillus pycnus strain X33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1096211..1107908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8X41_RS05445 - 1096621..1097169 (+) 549 WP_397539241.1 SMI1/KNR4 family protein -
  Q8X41_RS05455 spo0A 1098986..1099777 (-) 792 WP_397539243.1 sporulation transcription factor Spo0A -
  Q8X41_RS05460 - 1100074..1101033 (-) 960 WP_397539244.1 SpoIVB peptidase S55 domain-containing protein -
  Q8X41_RS05465 recN 1101211..1102908 (-) 1698 WP_397539245.1 DNA repair protein RecN Machinery gene
  Q8X41_RS05470 ahrC 1102935..1103384 (-) 450 WP_397539246.1 transcriptional regulator AhrC/ArgR -
  Q8X41_RS05475 - 1103487..1104308 (-) 822 WP_397539247.1 TlyA family RNA methyltransferase -
  Q8X41_RS05480 dxs 1104308..1106215 (-) 1908 WP_397539248.1 1-deoxy-D-xylulose-5-phosphate synthase -
  Q8X41_RS05485 - 1106308..1107192 (-) 885 WP_397539249.1 polyprenyl synthetase family protein -
  Q8X41_RS05490 - 1107193..1107432 (-) 240 WP_397539250.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63853.46 Da        Isoelectric Point: 4.7077

>NTDB_id=868000 Q8X41_RS05465 WP_397539245.1 1101211..1102908(-) (recN) [Rummeliibacillus pycnus strain X33]
MLKELSIKNFAIIEELTVDFQEGLTVLTGETGAGKSIIIDAVQLLAGGRGSQEFIRHGAKKAELEGLFTVAQDSHLAYEK
CADAGIDIEEGMIILRRDLNDNGKSVCRINGKLVPLSLLREIGATLIDIHGQHESQELMDDKHHISLLDQFAGDEIEPVK
ARYLNRYDEYKSLKKELAAISVNEQQVAQKIDLYQFQIKEIDACKFQPSEEEDLTEERRRLMNFNKIFECSNSAHEAILG
ESKGLDWIGRAMADLEDVATVDESFKEYSDAVSNAFYNLQEAAFGVKNILDDLEFDPERLNEVEHRLALIQSMKRKYGPT
LQEILEYREKIGEELESLLNRDENIQKNEQQLIELRKKLQVTANELTVIRKKVGNKLSDAIMQQLRELYMEKAEFSVHFE
SLQEEQFDHNGLDRIVFYIATNVGEPPKPLTKIASGGELSRVMLALKTIFSTTNGITSIIFDEVDTGVSGRVAQAIAEKI
AAISIHSQVLCISHLPQVAAMADHHYHIQKQEDTNRTFTSLTEIFGNDRIDEISRIMSGAEVTELTFQHAKELIQIADER
KKAMI

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=868000 Q8X41_RS05465 WP_397539245.1 1101211..1102908(-) (recN) [Rummeliibacillus pycnus strain X33]
TTGTTAAAAGAGCTATCTATCAAAAATTTTGCAATTATAGAAGAGCTAACTGTTGATTTTCAAGAAGGACTAACAGTGTT
AACAGGGGAAACTGGTGCAGGTAAATCCATTATTATCGATGCTGTTCAGTTATTAGCGGGTGGACGAGGTTCTCAAGAAT
TTATTAGACATGGTGCGAAAAAGGCTGAATTAGAAGGCCTTTTTACAGTGGCACAGGACAGTCATTTAGCGTATGAAAAA
TGTGCGGATGCAGGAATCGATATTGAAGAAGGTATGATTATCTTACGTCGCGATTTAAACGATAACGGTAAAAGCGTATG
TCGCATTAATGGAAAACTTGTCCCATTGTCTCTACTACGTGAAATCGGTGCGACTTTAATCGATATTCACGGGCAACATG
AGAGCCAAGAATTGATGGATGATAAGCACCATATATCATTGCTCGATCAATTTGCAGGAGATGAAATTGAGCCTGTAAAA
GCACGCTATTTAAATCGGTATGATGAATATAAATCATTGAAAAAGGAACTTGCAGCTATTTCCGTAAACGAACAACAAGT
TGCTCAAAAAATTGACCTTTACCAATTTCAAATTAAAGAAATTGACGCTTGTAAATTCCAGCCAAGCGAGGAAGAAGATT
TGACCGAAGAACGTCGTCGATTAATGAATTTCAACAAAATTTTTGAATGTTCGAATTCAGCTCATGAAGCAATCTTAGGT
GAGTCAAAAGGACTTGATTGGATTGGACGAGCTATGGCAGATTTGGAAGATGTTGCGACAGTAGATGAAAGCTTTAAAGA
GTATTCTGATGCAGTATCGAATGCCTTTTATAATCTACAAGAAGCTGCATTTGGTGTAAAAAATATTTTAGATGATCTTG
AATTCGACCCAGAACGATTAAATGAAGTAGAGCACCGTTTAGCACTTATTCAATCAATGAAACGCAAATACGGACCTACT
TTACAGGAAATTTTAGAATACCGTGAAAAAATTGGTGAAGAATTAGAATCCTTATTAAATCGTGATGAAAATATTCAAAA
AAATGAACAACAATTAATTGAACTTCGGAAAAAACTTCAAGTTACAGCGAATGAATTAACAGTAATTCGTAAAAAAGTAG
GCAATAAACTATCTGATGCTATTATGCAACAATTACGCGAATTGTATATGGAAAAAGCGGAATTTAGCGTTCATTTTGAA
TCATTACAAGAAGAACAATTTGATCATAATGGTTTGGACAGAATCGTATTTTATATTGCTACAAATGTTGGAGAGCCACC
GAAACCACTTACGAAAATTGCGTCAGGTGGAGAACTTTCTCGTGTTATGCTTGCTTTGAAAACAATTTTCTCAACAACAA
ATGGTATTACATCAATCATTTTCGATGAAGTAGATACTGGCGTCAGTGGAAGAGTTGCACAAGCAATTGCAGAAAAAATT
GCCGCAATTTCAATACATTCTCAAGTTCTATGTATTTCCCATTTGCCTCAAGTTGCAGCAATGGCAGATCATCATTATCA
TATCCAAAAACAAGAGGATACAAATCGAACTTTTACATCTTTAACTGAAATTTTTGGTAATGATCGAATCGATGAAATCA
GTCGTATCATGTCCGGAGCGGAAGTAACTGAATTGACATTCCAACATGCTAAAGAATTGATTCAAATTGCTGATGAACGG
AAAAAAGCAATGATTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.31

100

0.542