Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q8X37_RS22785 Genome accession   NZ_CP132290
Coordinates   4778995..4780518 (+) Length   507 a.a.
NCBI ID   WP_079452495.1    Uniprot ID   -
Organism   Serratia marcescens strain X1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4773995..4785518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8X37_RS22760 - 4774196..4775122 (-) 927 WP_016930475.1 branched-chain amino acid transaminase -
  Q8X37_RS22765 ilvM 4775146..4775403 (-) 258 WP_004929955.1 acetolactate synthase 2 small subunit -
  Q8X37_RS22770 ilvG 4775400..4777046 (-) 1647 WP_033639153.1 acetolactate synthase 2 catalytic subunit -
  Q8X37_RS22775 ilvL 4777189..4777287 (-) 99 WP_013814970.1 ilv operon leader peptide -
  Q8X37_RS22780 - 4777421..4778653 (-) 1233 WP_004929950.1 MFS transporter -
  Q8X37_RS22785 comM 4778995..4780518 (+) 1524 WP_079452495.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Q8X37_RS22790 - 4780546..4780884 (-) 339 WP_004929946.1 DUF413 domain-containing protein -
  Q8X37_RS22795 hdfR 4781004..4781831 (+) 828 WP_028128092.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54513.73 Da        Isoelectric Point: 7.6226

>NTDB_id=867992 Q8X37_RS22785 WP_079452495.1 4778995..4780518(+) (comM) [Serratia marcescens strain X1]
MSLALIYSRAIIGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINSGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPLAPLARYEFLGELALSGSLRAVRGAIPAALAAADAGRQLILSTDNAAEVGLIAQSRSHTAQHL
LEVCAFLLGQGELPVAATPPDADNACENADLRDIIGQEQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLTGLLPPLTE
AEALESLAIASLQHHIPAALLWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERKVLDALREPLE
SGEIVISRANAKVCFPARVQLIAAMNPSPTGHYQGLHNRASPQQVLRYLARLSGPFLDRFDLSIEVPLLPPGTLSHRKTH
GESSEQVRKRVQQARARQLERAGKVNALLSNREVERDCVLQAADAEFLEATLNTLGLSVRAWQRILKVARTLADLAGDAE
LDRRHLSEALGYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=867992 Q8X37_RS22785 WP_079452495.1 4778995..4780518(+) (comM) [Serratia marcescens strain X1]
ATGTCACTGGCGTTAATCTATAGCCGCGCCATCATCGGCGTTCAGGCCCCTTCCGTAACGGTGGAGGTGCATATCAGCAA
TGGCCTGCCCGGCCTGACGCTGGTCGGCCTGCCGGAAACCACGGTAAAAGAGGCGCGCGATCGGGTGCGCAGCGCCCTGA
TCAACAGCGGTTTCACCTTTCCCGCCCGGCGCATCACCGTCAATTTGGCGCCCGCCGATCTGCCAAAAGAAGGCGGGCGT
TACGATCTGCCGATAGCGCTGGCGATCCTCGCCGCCTCCGAGCAATTGCCCCTCGCGCCGTTGGCGCGCTACGAGTTTCT
TGGCGAGCTCGCGCTGTCTGGCTCACTGCGCGCGGTCAGGGGAGCGATCCCGGCGGCACTGGCGGCGGCTGATGCCGGGC
GGCAACTGATCCTCTCGACGGACAACGCCGCCGAAGTCGGCCTGATCGCGCAGTCGCGCTCCCATACCGCCCAACACCTG
CTGGAAGTCTGCGCTTTTTTGCTGGGCCAAGGCGAACTGCCGGTGGCGGCCACGCCCCCCGATGCGGACAACGCGTGCGA
AAACGCCGACCTGCGCGACATCATCGGTCAGGAACAGGCCAAGCGGGCATTAGAGATCGCCGCCGCCGGCGGGCATAACC
TGCTGTTGATTGGGCCACCGGGCACCGGTAAAACCATGCTGGCCAGCCGTCTCACGGGCTTGCTACCGCCGCTGACGGAG
GCTGAGGCGCTGGAAAGCCTGGCGATCGCCAGCTTGCAGCATCACATTCCCGCCGCGCTACTATGGCGCCAGAGGCCGTT
TCGCGCGCCGCACCACAGCGCCTCGATGGCGGCATTGGTCGGCGGCGGCTCACTGCCGCGACCGGGCGAGATCTCGATGG
CGCATAACGGCGTGCTGTTTCTGGATGAACTGCCGGAATTCGAGCGTAAGGTACTGGATGCGCTGCGTGAGCCATTGGAA
TCCGGCGAGATCGTGATTTCGCGTGCCAACGCCAAGGTCTGTTTCCCCGCCAGGGTGCAACTGATCGCGGCAATGAACCC
CAGTCCGACAGGGCATTATCAGGGGTTGCACAATCGCGCCTCACCGCAGCAGGTGTTGCGCTATCTGGCCCGGCTGTCAG
GGCCTTTTCTCGACCGTTTCGATCTGTCTATCGAAGTGCCGTTGTTGCCGCCGGGTACGCTCAGTCATCGGAAAACCCAT
GGAGAAAGCAGCGAACAAGTACGGAAAAGGGTGCAGCAGGCACGCGCCCGGCAGCTCGAACGCGCCGGTAAAGTCAACGC
GCTGTTGAGCAACCGTGAAGTGGAACGAGATTGCGTTTTGCAGGCGGCAGACGCCGAGTTTTTGGAAGCGACATTAAACA
CGCTGGGGTTATCGGTCCGCGCCTGGCAGCGCATCTTGAAAGTGGCGCGCACGCTGGCGGATTTGGCGGGAGATGCTGAG
CTCGACAGGCGTCACCTCAGCGAAGCGCTGGGCTATCGCAGTATGGACCGTCTGCTGTTACAACTGCATCGCAGCCTGGA
ATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

65.81

99.803

0.657
  comM Glaesserella parasuis strain SC1401

65.422

100

0.657
  comM Vibrio cholerae strain A1552

66.135

99.014

0.655
  comM Vibrio campbellii strain DS40M4

64.542

99.014

0.639
  comM Legionella pneumophila str. Paris

51.406

98.225

0.505
  comM Legionella pneumophila strain ERS1305867

51.406

98.225

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.276

100

0.454