Detailed information    

insolico Bioinformatically predicted

Overview


Name   uvrA   Type   Machinery gene
Locus tag   WHP61_RS04690 Genome accession   NZ_CP148214
Coordinates   856228..859053 (-) Length   941 a.a.
NCBI ID   WP_070290260.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0059     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 851228..864053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP61_RS04675 (WHP61_04675) - 853460..854820 (+) 1361 Protein_909 MFS transporter -
  WHP61_RS04680 (WHP61_04680) - 854817..855824 (+) 1008 WP_002860301.1 nucleoside hydrolase -
  WHP61_RS04685 (WHP61_04685) - 855780..856223 (-) 444 WP_002868165.1 YqaA family protein -
  WHP61_RS04690 (WHP61_04690) uvrA 856228..859053 (-) 2826 WP_070290260.1 excinuclease ABC subunit UvrA Machinery gene
  WHP61_RS04695 (WHP61_04695) - 859126..859911 (-) 786 WP_338877722.1 sulfite exporter TauE/SafE family protein -
  WHP61_RS04700 (WHP61_04700) - 860035..860124 (+) 90 WP_042635777.1 hypothetical protein -
  WHP61_RS04705 (WHP61_04705) trpE 860327..861577 (+) 1251 WP_002858746.1 anthranilate synthase component I family protein -
  WHP61_RS04710 (WHP61_04710) trpD 861574..863175 (+) 1602 WP_002867764.1 anthranilate phosphoribosyltransferase -
  WHP61_RS04715 (WHP61_04715) trpF 863162..863761 (+) 600 WP_002872431.1 N-(5'-phosphoribosyl)anthranilate isomerase -

Sequence


Protein


Download         Length: 941 a.a.        Molecular weight: 105613.05 Da        Isoelectric Point: 8.7867

>NTDB_id=867973 WHP61_RS04690 WP_070290260.1 856228..859053(-) (uvrA) [Campylobacter jejuni strain Z1323CCJ0059]
MNDTIKIIGARENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFGTLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGL
TPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLYARVGIQHCHQCGQKISSMGVSDIVSEILKFPKGAKIIIYAPLIREKK
GTYADLLENLRNKGYVRAQIDGVLVRLDEEIELAKTKKHTIKLVIDRLEIQEDLLSRLASDIEKGLQESFGEIEIEVLNH
EEINLNKHYHFSEHSACFDCKISFVPLEPLSFSFNSPKGACEACDGLGIRYALDMKKIIDENLSLENGAVKIMYGFNKSY
YYKFLIAFCEQNEIPIKIPFMQLNEEQKRLVLYGNAKTIEFLWKRNRLKRTFEGVVKMAYEMLKDEKDLAEYMSEKICKD
CGGHRLKPESLAVKVAKKSLGEILDMSIEDSTAFFADEKNFSYLSEQQKLISKPILKEINERLFFLYDVGLGYLSLGRDA
RTISGGEAQRIRIASQIGSGLSGVMYVLDEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKA
GKFGGEVVFSGTYKELLKSKSETALYMNGKKQISQLQNRTQKEWLELKNVNINNIQDLRVKFPLQNLVAITGVSGSGKSS
LILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLDQSPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKA
GRFSFNVKGGRCEKCSGDGEIKIEMHFLPDVMVVCDTCGGKRYNDATLEIKYKGKNISEILNMSVLEASEFFTAVPKIKQ
KLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLHFEDVNKLILVLQHLVDLKNSVFVI
EHNLDVIKNADYIIDMGPEGGVKGGKVISTGSVEKVAKEHKKTRSYTGYYLDLELKNTQKS

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=867973 WHP61_RS04690 WP_070290260.1 856228..859053(-) (uvrA) [Campylobacter jejuni strain Z1323CCJ0059]
ATGAACGATACCATAAAAATCATTGGCGCAAGAGAAAATAACCTAAAAAATATCCACCTTGAAATTCCCAAAAACAAACT
CATTGTTTTTACAGGACTGAGCGGAAGTGGAAAATCAACCCTTGCTTTTGGAACTCTTTATGCTGAAGGACAACGCCGTT
ATATAGAAAGTTTAAGTGCTTACGCCAGACAATTTTTAGATAAGGTAGGCAAACCTGATGTCGATAAAATCGAAGGTTTA
ACTCCAGCCATTGCCATAGATCAAAAAACTACTTCTAAAAATCCACGCTCTACTGTAGGAACCATCACTGAAATTTATGA
TTATCTAAGACTTTTATACGCAAGAGTTGGCATTCAACATTGTCATCAATGTGGACAAAAAATTTCGTCTATGGGTGTAA
GTGATATAGTCAGTGAAATTTTAAAATTTCCAAAAGGTGCAAAAATCATCATCTACGCCCCACTCATACGAGAAAAAAAA
GGAACTTATGCAGATTTGCTTGAAAATTTACGCAACAAAGGCTATGTAAGAGCTCAAATTGATGGAGTTTTGGTAAGACT
TGATGAAGAAATTGAACTAGCCAAAACCAAAAAACACACCATTAAACTTGTCATAGATAGGCTTGAAATTCAAGAAGATT
TACTTTCTCGTCTTGCAAGCGATATAGAAAAAGGCTTACAAGAAAGCTTTGGAGAAATAGAAATAGAAGTTTTAAATCAT
GAGGAAATAAACCTTAATAAACACTATCATTTTAGCGAGCATTCAGCTTGTTTTGATTGTAAAATTTCCTTTGTTCCACT
CGAGCCTTTAAGCTTTTCTTTTAATTCTCCAAAAGGAGCATGTGAAGCTTGCGATGGACTTGGAATTCGTTATGCTTTAG
ATATGAAAAAAATCATCGATGAAAATTTAAGTCTCGAAAACGGTGCTGTTAAAATCATGTATGGTTTTAATAAAAGTTAT
TATTATAAATTCCTAATCGCCTTTTGCGAACAAAATGAAATTCCTATCAAAATACCTTTTATGCAATTAAACGAAGAACA
AAAACGTCTTGTATTGTATGGTAATGCCAAAACTATAGAATTTCTTTGGAAAAGAAATCGCCTAAAACGCACTTTTGAAG
GCGTGGTTAAAATGGCTTATGAAATGCTAAAAGATGAAAAAGATTTAGCCGAATATATGAGTGAAAAAATTTGTAAAGAC
TGCGGTGGGCATCGTTTAAAACCTGAAAGTTTAGCCGTGAAAGTAGCCAAAAAAAGCTTGGGTGAAATTTTAGATATGAG
CATAGAAGATAGTACGGCCTTTTTTGCAGATGAGAAAAATTTTTCTTATTTAAGCGAGCAACAAAAACTTATTTCTAAAC
CTATCCTAAAAGAAATCAACGAAAGATTGTTTTTCTTGTATGATGTGGGGCTAGGTTATCTTTCTTTAGGGCGCGATGCA
AGAACGATTAGTGGGGGTGAAGCACAAAGAATCCGCATAGCTTCACAAATTGGCAGTGGTTTAAGCGGAGTGATGTATGT
CTTAGATGAGCCTAGCATAGGACTTCATGAAAGAGATACTGCAAAACTGATTAAAACTTTAAGAAATTTACAACAAAAGG
GCAATACCCTAATTGTCGTAGAGCATGATAAAATGACCATAGAAGAAGCAGATTTTATTGTAGATATTGGTCCAAAAGCA
GGAAAATTTGGGGGTGAGGTTGTATTTAGTGGAACTTATAAAGAACTTTTAAAAAGCAAAAGCGAAACTGCACTTTATAT
GAATGGTAAAAAACAAATTTCACAACTTCAAAACAGAACACAGAAAGAATGGCTTGAGCTTAAAAATGTAAATATTAACA
ATATCCAAGATTTAAGAGTAAAATTTCCTTTGCAAAATTTAGTCGCTATAACAGGAGTTTCAGGTTCTGGAAAAAGCTCT
TTGATACTTCAAACCCTACTTCCTTTTGCACAAGAGGAATTAAACCGTGCGAAAAAAGTTAAAAAACTTGGCGGAGTACA
AATAGAAGGACTTGAAAAACTTGATAAAGTCATTTATCTTGATCAAAGCCCAATTGGGCGCACACCACGTTCAAATCCTG
CCACCTATACAGGTGCTATGGATGAAATCAGAAATCTTTTTGCCGCCACTAAAGAAGCCAAAATGCGTGGTTATAAAGCC
GGACGCTTTTCTTTTAATGTCAAGGGTGGAAGATGTGAGAAATGTAGCGGAGATGGAGAAATCAAAATAGAAATGCATTT
TTTACCTGATGTTATGGTAGTTTGTGATACTTGCGGGGGCAAACGCTACAATGATGCCACGCTAGAAATTAAATATAAAG
GCAAAAATATCAGTGAAATTTTAAATATGAGTGTTTTAGAAGCGAGTGAATTTTTTACAGCCGTTCCTAAAATCAAACAA
AAATTAGATACTCTAGTAAAAGTGGGTTTAGATTATCTAACTCTAGGACAAAATGCCACCACCTTAAGTGGAGGTGAAGC
ACAAAGAATCAAACTTGCTAAAGAACTAAGCCGTAGCGATACAGGAAAAACGCTTTATATACTTGATGAACCTACAACAG
GACTGCATTTTGAAGATGTCAATAAACTCATCTTAGTTTTACAACATTTGGTTGATCTTAAAAATTCTGTTTTTGTGATA
GAACATAATTTAGATGTGATTAAAAATGCTGATTATATCATCGATATGGGGCCTGAAGGTGGAGTTAAAGGTGGAAAAGT
TATAAGCACAGGAAGCGTGGAAAAAGTCGCTAAAGAACACAAAAAAACCCGTTCTTACACAGGATATTATCTAGACTTAG
AGCTTAAAAATACACAAAAATCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

52.05

100

0.526

  uvrA Streptococcus pneumoniae TIGR4

52.05

100

0.526

  uvrA Streptococcus pneumoniae D39

52.05

100

0.526