Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GXN37_RS15660 Genome accession   NZ_CP132279
Coordinates   3204993..3205607 (-) Length   204 a.a.
NCBI ID   WP_048212109.1    Uniprot ID   A0A9Q7ZQA3
Organism   Citrobacter youngae strain UL-CPE-01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3199993..3210607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GXN37_RS15645 helD 3200217..3202271 (-) 2055 WP_124021543.1 DNA helicase IV -
  GXN37_RS15650 - 3202397..3202843 (+) 447 WP_005123514.1 YccF domain-containing protein -
  GXN37_RS15655 yccS 3202862..3205015 (+) 2154 WP_005123516.1 YccS family putative transporter -
  GXN37_RS15660 sxy/tfoX 3204993..3205607 (-) 615 WP_048212109.1 TfoX/Sxy family DNA transformation protein Regulator
  GXN37_RS15665 sulA 3205824..3206333 (+) 510 WP_040231828.1 SOS-induced cell division inhibitor SulA -
  GXN37_RS15670 ompA 3206689..3207738 (+) 1050 WP_048212110.1 porin OmpA -
  GXN37_RS15675 matP 3207837..3208289 (-) 453 WP_005123520.1 macrodomain Ter protein MatP -
  GXN37_RS15680 - 3208475..3210235 (+) 1761 WP_048212112.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23336.10 Da        Isoelectric Point: 9.6920

>NTDB_id=867965 GXN37_RS15660 WP_048212109.1 3204993..3205607(-) (sxy/tfoX) [Citrobacter youngae strain UL-CPE-01]
MKKLSYARIYKSQEYLASLGTIRYRSLFGGYSLTVEDTVFAMVASGELYLRACEQSAQYCVKHSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSRYSLDAALKEKQSRFAQHRLRGLPNMTFHLETLLNEAGIKDESTLRMLGAKMCWLKLRQVN
PALTVKILYALEGAIGGIHEAALPAIRRQELVEWVSSLTPEPVY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=867965 GXN37_RS15660 WP_048212109.1 3204993..3205607(-) (sxy/tfoX) [Citrobacter youngae strain UL-CPE-01]
ATGAAAAAACTTTCTTATGCAAGGATCTATAAATCACAAGAATATCTGGCGTCATTGGGGACTATTCGTTATCGATCGCT
GTTTGGGGGTTATAGCCTGACGGTTGAGGACACGGTATTCGCCATGGTCGCCAGTGGCGAGTTATATCTTCGGGCCTGTG
AACAGAGTGCGCAGTACTGTGTAAAACATTCCCCTGTCTGGCTGACATTTATAAAACGTGGACGTCCGGTGGTGCTCAAT
TATTATCAGGTGAACGATACGCTGTGGCAAAACCAGCAACAACTGGTGTCGCTATCACGGTATTCACTGGATGCGGCGTT
AAAAGAAAAGCAAAGTCGTTTTGCACAGCATCGCCTGCGTGGACTGCCGAACATGACATTCCATCTGGAAACCCTGCTGA
ATGAAGCAGGTATAAAAGATGAAAGCACATTACGCATGTTGGGGGCAAAAATGTGCTGGTTGAAACTGCGACAGGTTAAT
CCCGCCCTGACGGTGAAAATACTCTATGCCCTTGAAGGCGCAATTGGGGGAATTCATGAGGCGGCGCTCCCGGCGATTCG
TCGCCAGGAGCTTGTGGAGTGGGTGAGTTCTCTTACGCCTGAACCGGTGTACTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

72.637

98.529

0.716