Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   WHQ12_RS03375 Genome accession   NZ_CP148213
Coordinates   622682..623065 (-) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain Z1323CCJ0062     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 617682..628065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ12_RS03350 (WHQ12_03350) aspS 618245..619996 (+) 1752 WP_146263284.1 aspartate--tRNA ligase -
  WHQ12_RS03355 (WHQ12_03355) adk 619993..620571 (+) 579 WP_002859580.1 adenylate kinase -
  WHQ12_RS03360 (WHQ12_03360) ppa 620581..621099 (+) 519 WP_002867724.1 inorganic diphosphatase -
  WHQ12_RS03365 (WHQ12_03365) msrA 621141..621638 (+) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHQ12_RS03370 (WHQ12_03370) - 621814..622653 (-) 840 WP_011049748.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHQ12_RS03375 (WHQ12_03375) dprB 622682..623065 (-) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  WHQ12_RS03380 (WHQ12_03380) dprA 623062..623835 (-) 774 WP_002867721.1 DNA-processing protein DprA Machinery gene
  WHQ12_RS03385 (WHQ12_03385) - 623825..624907 (-) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  WHQ12_RS03390 (WHQ12_03390) ilvC 624911..625933 (-) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  WHQ12_RS03395 (WHQ12_03395) - 626052..627986 (+) 1935 WP_002867720.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=867918 WHQ12_RS03375 WP_002852281.1 622682..623065(-) (dprB) [Campylobacter jejuni strain Z1323CCJ0062]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=867918 WHQ12_RS03375 WP_002852281.1 622682..623065(-) (dprB) [Campylobacter jejuni strain Z1323CCJ0062]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCCTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449