Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   Q9318_RS04550 Genome accession   NZ_CP132229
Coordinates   893216..894025 (+) Length   269 a.a.
NCBI ID   WP_003101333.1    Uniprot ID   A0A1J0MZV5
Organism   Streptococcus iniae strain BH16-24     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 888216..899025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9318_RS04525 (Q9318_04525) - 888568..889269 (-) 702 WP_003101340.1 amino acid ABC transporter permease -
  Q9318_RS04530 (Q9318_04530) - 889284..890102 (-) 819 WP_003101339.1 transporter substrate-binding domain-containing protein -
  Q9318_RS04535 (Q9318_04535) - 890099..890896 (-) 798 WP_003101338.1 amino acid ABC transporter ATP-binding protein -
  Q9318_RS04540 (Q9318_04540) vicR 891151..891861 (+) 711 WP_003101337.1 response regulator YycF Regulator
  Q9318_RS04545 (Q9318_04545) vicK 891854..893212 (+) 1359 WP_003101335.1 cell wall metabolism sensor histidine kinase VicK Regulator
  Q9318_RS04550 (Q9318_04550) vicX 893216..894025 (+) 810 WP_003101333.1 MBL fold metallo-hydrolase Regulator
  Q9318_RS04555 (Q9318_04555) rnc 894128..894820 (+) 693 WP_003101331.1 ribonuclease III -
  Q9318_RS04560 (Q9318_04560) smc 894821..898366 (+) 3546 WP_003101330.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30014.07 Da        Isoelectric Point: 5.5565

>NTDB_id=867841 Q9318_RS04550 WP_003101333.1 893216..894025(+) (vicX) [Streptococcus iniae strain BH16-24]
MEEVGFKYSILASGSTGNSFYIETPKKKLLVDAGLTGKKVTSLLAEIDRSPEDLDAILITHEHSDHIKGVGVLARKYNLD
IYANSKTWQMIDHRQMLGKIDVAQKHVFERDKMMTFGDLDVESFGVSHDAADPQFYRFMKDGKSFVMLTDTGYVSDRLSG
VIENADAYLIESNHDIEILRSGSYPWSLKQRILSDQGHLSNEDGAAAMIRSMGNKTKKIFLGHLSKENNIKELAHMTMEN
QLAMADLPLGSQFTVFDTSPDTACPLSDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=867841 Q9318_RS04550 WP_003101333.1 893216..894025(+) (vicX) [Streptococcus iniae strain BH16-24]
ATGGAAGAAGTAGGATTTAAATACAGTATTTTAGCATCTGGATCGACAGGTAATAGCTTCTATATTGAAACACCTAAGAA
GAAATTATTGGTTGATGCAGGCTTAACAGGAAAAAAAGTAACCAGCTTGCTAGCTGAGATAGACCGCTCTCCTGAAGATT
TAGACGCCATATTAATTACACATGAGCATTCAGATCATATCAAGGGAGTTGGTGTTCTAGCTCGCAAATATAACCTTGAT
ATTTACGCCAATTCAAAAACATGGCAAATGATTGATCACCGTCAGATGCTTGGAAAGATTGATGTGGCACAAAAACACGT
CTTTGAAAGAGATAAGATGATGACTTTCGGGGATTTAGATGTCGAGAGTTTCGGTGTTAGCCACGACGCTGCTGATCCTC
AATTTTACCGTTTTATGAAAGATGGGAAATCCTTTGTCATGTTAACAGATACAGGTTATGTTAGTGATAGGCTTTCTGGT
GTCATCGAGAACGCTGATGCTTACTTGATTGAATCCAATCATGATATCGAAATTCTAAGGTCAGGTTCTTACCCTTGGAG
TCTCAAACAGCGAATCTTATCGGATCAAGGTCATTTGTCAAATGAAGACGGTGCGGCAGCTATGATACGCAGTATGGGAA
ATAAGACCAAAAAAATCTTTTTGGGGCATTTAAGTAAAGAAAATAATATCAAAGAATTAGCGCACATGACCATGGAAAAT
CAGTTAGCAATGGCAGATTTGCCTTTAGGGTCACAATTTACTGTTTTTGATACCTCACCTGATACTGCCTGTCCTTTATC
GGATATCTAA

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

72.862

100

0.729