Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | AABJ68_RS09460 | Genome accession | NZ_AP027515 |
| Coordinates | 1938645..1939655 (+) | Length | 336 a.a. |
| NCBI ID | WP_000568514.1 | Uniprot ID | - |
| Organism | Escherichia coli strain LR-29-1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1933645..1944655
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABJ68_RS09430 (VEE08_18040) | nudB | 1935368..1935820 (+) | 453 | WP_001300367.1 | dihydroneopterin triphosphate diphosphatase | - |
| AABJ68_RS09435 (VEE08_18050) | yebC | 1935849..1936589 (+) | 741 | WP_000907248.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| AABJ68_RS09440 (VEE08_18060) | ruvC | 1936624..1937145 (+) | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| AABJ68_RS09445 (VEE08_18070) | yebB | 1937147..1937749 (-) | 603 | WP_001024924.1 | YebB family permuted papain-like enzyme | - |
| AABJ68_RS09450 | yobI | 1937821..1937886 (+) | 66 | WP_072094247.1 | stress response small protein YobI | - |
| AABJ68_RS09455 (VEE08_18080) | ruvA | 1938025..1938636 (+) | 612 | WP_000580327.1 | Holliday junction branch migration protein RuvA | - |
| AABJ68_RS09460 (VEE08_18090) | ruvB | 1938645..1939655 (+) | 1011 | WP_000568514.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| AABJ68_RS09465 (VEE08_18100) | znuB | 1939802..1940587 (-) | 786 | WP_000571479.1 | zinc ABC transporter permease subunit ZnuB | - |
| AABJ68_RS09470 (VEE08_18110) | znuC | 1940584..1941339 (-) | 756 | WP_000202980.1 | zinc ABC transporter ATP-binding protein ZnuC | - |
| AABJ68_RS09475 (VEE08_18120) | znuA | 1941418..1942350 (+) | 933 | WP_001342995.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| AABJ68_RS09480 (VEE08_18130) | mepM | 1942366..1943688 (+) | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37187.80 Da Isoelectric Point: 4.7818
>NTDB_id=86783 AABJ68_RS09460 WP_000568514.1 1938645..1939655(+) (ruvB) [Escherichia coli strain LR-29-1]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEIARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEIARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP
Nucleotide
Download Length: 1011 bp
>NTDB_id=86783 AABJ68_RS09460 WP_000568514.1 1938645..1939655(+) (ruvB) [Escherichia coli strain LR-29-1]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTAGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATTTGTTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCGATGCTCACTAACCTTGAACCGCA
TGACGTGCTGTTTATTGATGAGATCCACCGTTTATCGCCAGTTGTTGAAGAAGTGCTGTACCCGGCAATGGAAGACTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGACCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAATTGCTC
GTCGCGCTCGCGGTACGCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGTTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTGGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAAGATGTACTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGCGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTAGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATTTGTTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCGATGCTCACTAACCTTGAACCGCA
TGACGTGCTGTTTATTGATGAGATCCACCGTTTATCGCCAGTTGTTGAAGAAGTGCTGTACCCGGCAATGGAAGACTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGACCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAATTGCTC
GTCGCGCTCGCGGTACGCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGTTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTGGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAAGATGTACTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGCGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
60.79 |
97.917 |
0.595 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.934 |
94.94 |
0.56 |
| ruvB | Streptococcus pneumoniae R6 |
58.934 |
94.94 |
0.56 |
| ruvB | Streptococcus pneumoniae D39 |
58.934 |
94.94 |
0.56 |
| ruvB | Synechocystis sp. PCC 6803 |
53.56 |
96.131 |
0.515 |
| ruvB | Helicobacter pylori 26695 |
52.351 |
94.94 |
0.497 |