Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   K6J89_RS12015 Genome accession   NZ_AP024621
Coordinates   2320100..2320720 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain BEST3095     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2315100..2325720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J89_RS11975 (BsBEST3095_22790) ptsA 2316231..2316737 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  K6J89_RS11980 (BsBEST3095_22800) ypqA 2316875..2317294 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  K6J89_RS11985 (BsBEST3095_22810) sppG 2317315..2317692 (-) 378 WP_004398696.1 YppG family protein -
  K6J89_RS11990 (BsBEST3095_22820) yppF 2317880..2318068 (+) 189 WP_003230690.1 YppF family protein -
  K6J89_RS11995 (BsBEST3095_22830) yppE 2318107..2318478 (-) 372 WP_003246080.1 YppE family protein -
  K6J89_RS12000 (BsBEST3095_22840) yppD 2318524..2318769 (-) 246 WP_004398488.1 YppD family protein -
  K6J89_RS12005 sspM 2318968..2319072 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  K6J89_RS12010 (BsBEST3095_22850) yppC 2319097..2320059 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  K6J89_RS12015 (BsBEST3095_22860) recU 2320100..2320720 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  K6J89_RS12020 (BsBEST3095_22870) ponA 2320742..2323486 (+) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  K6J89_RS12025 (BsBEST3095_22880) ypoC 2323562..2324056 (-) 495 WP_009967579.1 YpoC family protein -
  K6J89_RS12030 (BsBEST3095_22890) nth 2324053..2324712 (-) 660 WP_009967580.1 endonuclease III -
  K6J89_RS12035 (BsBEST3095_22900) dnaD 2324731..2325429 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=86773 K6J89_RS12015 WP_004399067.1 2320100..2320720(+) (recU) [Bacillus subtilis strain BEST3095]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=86773 K6J89_RS12015 WP_004399067.1 2320100..2320720(+) (recU) [Bacillus subtilis strain BEST3095]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment