Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   Q9G86_RS25690 Genome accession   NZ_CP132200
Coordinates   5052536..5053885 (-) Length   449 a.a.
NCBI ID   WP_305925924.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain L1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5047536..5058885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9G86_RS25655 (Q9G86_25655) - 5047699..5048394 (-) 696 WP_016513226.1 hypothetical protein -
  Q9G86_RS25660 (Q9G86_25660) - 5048381..5049169 (-) 789 WP_000120050.1 hypothetical protein -
  Q9G86_RS25665 (Q9G86_25665) - 5049201..5049770 (-) 570 WP_001211060.1 hypothetical protein -
  Q9G86_RS25670 (Q9G86_25670) - 5049888..5050370 (-) 483 WP_098566815.1 hypothetical protein -
  Q9G86_RS25675 (Q9G86_25675) hpf 5050642..5051184 (-) 543 WP_000671193.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  Q9G86_RS25680 (Q9G86_25680) cspC 5051508..5051705 (-) 198 WP_001990088.1 cold shock protein CspC -
  Q9G86_RS25685 (Q9G86_25685) - 5051832..5052536 (-) 705 WP_090978131.1 ComF family protein -
  Q9G86_RS25690 (Q9G86_25690) comFA 5052536..5053885 (-) 1350 WP_305925924.1 ATP-dependent helicase ComFA Machinery gene
  Q9G86_RS25695 (Q9G86_25695) - 5054013..5055440 (-) 1428 WP_141493236.1 NlpC/P60 family protein -
  Q9G86_RS25700 (Q9G86_25700) - 5055589..5055903 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  Q9G86_RS25705 (Q9G86_25705) - 5056076..5056918 (-) 843 WP_000684727.1 DegV family protein -
  Q9G86_RS25710 (Q9G86_25710) - 5057155..5057790 (+) 636 WP_000926669.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51165.03 Da        Isoelectric Point: 10.0316

>NTDB_id=867622 Q9G86_RS25690 WP_305925924.1 5052536..5053885(-) (comFA) [Bacillus thuringiensis strain L1]
MLAGKQLLLDELSSDLQRELNDLKKKGEVVYVQGVKKKASKYVCQRCGNIEQRLFASFLCKRCSKVCTYCRKCITMGRVS
ECALLVRGIAERKREKNLNLLRWSGTLSTGQNLAAQGVIEAIKRKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIKVAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVMVVDEIDAFPYCADQMLQYAVKQAM
KERAARIYLTATPDETWKRKFRRGEQKGVIVSGRYHRHPLPVPLFCWCGNWKKSLIHKRIPRVLLQWLQTYLNKKYPIFL
FVPHVRYIEEISLLLKSLNKRIEGVHAEDPGRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVVYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=867622 Q9G86_RS25690 WP_305925924.1 5052536..5053885(-) (comFA) [Bacillus thuringiensis strain L1]
ATGCTAGCGGGGAAACAGTTGCTATTAGACGAACTTTCTTCAGATTTACAGAGGGAATTAAATGATTTGAAAAAGAAGGG
AGAGGTCGTCTATGTACAGGGTGTAAAAAAGAAGGCTTCTAAATATGTATGTCAGCGCTGTGGAAATATAGAACAGCGGC
TATTTGCGTCGTTTTTATGTAAAAGATGCAGTAAAGTGTGCACATATTGCCGGAAGTGTATAACGATGGGGAGGGTAAGT
GAATGTGCTTTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAATTTAAACTTGCTACGGTGGAGCGGAACGTT
GTCTACTGGTCAGAATTTGGCGGCGCAAGGAGTTATAGAGGCTATTAAGCGAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGTATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCGAGAACGGATGTTGTTCTGGAATTAGCACCGAGATTACAGGAAGTATTTCCATATATAAAGGTAGCGGCTTTATATGG
AGGGAGTGTGGATAAAGAAAAAGATGCAGTACTAGTCGTTGCAACCACGCATCAATTATTGCGTTATTATAGGGCGTTTC
ATGTCATGGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAGAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCGAAAATTTAGAAGAGGTGAACAAAA
AGGTGTTATTGTTTCTGGACGATATCACCGTCATCCTTTGCCAGTTCCTTTGTTTTGTTGGTGCGGGAATTGGAAAAAAA
GCCTCATTCATAAAAGAATTCCTCGAGTTTTACTACAGTGGTTACAAACGTACTTAAATAAAAAATATCCTATTTTTTTA
TTTGTTCCCCATGTGCGATATATAGAAGAGATAAGCCTGTTGTTAAAGTCATTAAACAAGCGAATTGAAGGTGTACATGC
AGAAGATCCGGGTAGAAAAGAAAAAGTAGCGGCTTTCAGAAAAGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACAGTAAAAAATTTGCAAGTAGCGGTTTTAGGGGCGGAAGAAGAAATATTCTCAGAAAGTGCACTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCGTATGGAGAGGTCGTTTATTTTCACTATGGTAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(108-254)

Helicase conserved C-terminal domain (Helicase_C)

(312-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.679

98.441

0.499
  comFA Latilactobacillus sakei subsp. sakei 23K

41.709

88.641

0.37