Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | Q9G86_RS12870 | Genome accession | NZ_CP132200 |
| Coordinates | 2536866..2537144 (+) | Length | 92 a.a. |
| NCBI ID | WP_305926173.1 | Uniprot ID | - |
| Organism | Bacillus thuringiensis strain L1 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2525957..2568833 | 2536866..2537144 | within | 0 |
Gene organization within MGE regions
Location: 2525957..2568833
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q9G86_RS12790 (Q9G86_12790) | - | 2525957..2526199 (+) | 243 | WP_000494855.1 | DUF3937 family protein | - |
| Q9G86_RS12795 (Q9G86_12795) | - | 2526748..2527077 (+) | 330 | WP_016512777.1 | heterocycloanthracin/sonorensin family bacteriocin | - |
| Q9G86_RS12800 (Q9G86_12800) | - | 2527230..2527361 (+) | 132 | Protein_2448 | site-specific integrase | - |
| Q9G86_RS12805 (Q9G86_12805) | - | 2527560..2528045 (+) | 486 | WP_002041181.1 | hypothetical protein | - |
| Q9G86_RS12810 (Q9G86_12810) | - | 2528357..2529028 (+) | 672 | WP_000736204.1 | pPIWI_RE module domain-containing protein | - |
| Q9G86_RS12815 (Q9G86_12815) | - | 2529097..2530206 (-) | 1110 | WP_305926170.1 | tyrosine-type recombinase/integrase | - |
| Q9G86_RS12820 (Q9G86_12820) | - | 2530438..2530911 (+) | 474 | WP_063547376.1 | hypothetical protein | - |
| Q9G86_RS12825 (Q9G86_12825) | - | 2531202..2532293 (+) | 1092 | WP_305926171.1 | exosporium leader peptide-containing protein | - |
| Q9G86_RS12830 (Q9G86_12830) | - | 2532858..2534009 (+) | 1152 | WP_098256096.1 | AimR family lysis-lysogeny pheromone receptor | - |
| Q9G86_RS12835 (Q9G86_12835) | - | 2534047..2534193 (+) | 147 | WP_000720927.1 | hypothetical protein | - |
| Q9G86_RS12840 (Q9G86_12840) | - | 2534350..2534478 (+) | 129 | WP_255258933.1 | hypothetical protein | - |
| Q9G86_RS12845 (Q9G86_12845) | - | 2534517..2534870 (-) | 354 | WP_000491272.1 | helix-turn-helix domain-containing protein | - |
| Q9G86_RS12850 (Q9G86_12850) | - | 2535071..2535262 (+) | 192 | WP_000854271.1 | helix-turn-helix domain-containing protein | - |
| Q9G86_RS12855 (Q9G86_12855) | - | 2535319..2535585 (+) | 267 | WP_000522028.1 | helix-turn-helix domain-containing protein | - |
| Q9G86_RS12860 (Q9G86_12860) | - | 2535585..2535749 (+) | 165 | WP_047386177.1 | hypothetical protein | - |
| Q9G86_RS12865 (Q9G86_12865) | - | 2535807..2536862 (+) | 1056 | WP_305926172.1 | DnaD domain-containing protein | - |
| Q9G86_RS12870 (Q9G86_12870) | abrB | 2536866..2537144 (+) | 279 | WP_305926173.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Regulator |
| Q9G86_RS12875 (Q9G86_12875) | - | 2537137..2537496 (+) | 360 | WP_305926174.1 | cell division protein SepF | - |
| Q9G86_RS12880 (Q9G86_12880) | - | 2537515..2537682 (+) | 168 | WP_000717826.1 | DUF3954 domain-containing protein | - |
| Q9G86_RS12885 (Q9G86_12885) | - | 2537708..2537956 (+) | 249 | WP_305926175.1 | helix-turn-helix domain containing protein | - |
| Q9G86_RS12890 (Q9G86_12890) | - | 2537979..2538434 (+) | 456 | WP_075719310.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| Q9G86_RS12895 (Q9G86_12895) | - | 2538701..2539489 (-) | 789 | WP_075719308.1 | sulfotransferase family 2 domain-containing protein | - |
| Q9G86_RS12900 (Q9G86_12900) | - | 2540274..2540666 (-) | 393 | WP_000196761.1 | thiol-disulfide oxidoreductase DCC family protein | - |
| Q9G86_RS12905 (Q9G86_12905) | - | 2540973..2541146 (+) | 174 | WP_305926176.1 | hypothetical protein | - |
| Q9G86_RS12910 (Q9G86_12910) | - | 2541179..2541460 (+) | 282 | WP_075720498.1 | hypothetical protein | - |
| Q9G86_RS12915 (Q9G86_12915) | - | 2541492..2541692 (+) | 201 | WP_080497311.1 | hypothetical protein | - |
| Q9G86_RS12925 (Q9G86_12925) | - | 2545918..2546208 (-) | 291 | WP_075716704.1 | hypothetical protein | - |
| Q9G86_RS12930 (Q9G86_12930) | - | 2546478..2546660 (+) | 183 | WP_075716703.1 | hypothetical protein | - |
| Q9G86_RS12935 (Q9G86_12935) | - | 2547207..2547347 (+) | 141 | WP_305926177.1 | DUF3983 domain-containing protein | - |
| Q9G86_RS12940 (Q9G86_12940) | - | 2547463..2547633 (+) | 171 | WP_098015618.1 | hypothetical protein | - |
| Q9G86_RS12945 (Q9G86_12945) | - | 2547661..2548143 (+) | 483 | WP_075716701.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| Q9G86_RS12950 (Q9G86_12950) | - | 2548143..2548685 (+) | 543 | WP_001012109.1 | site-specific integrase | - |
| Q9G86_RS12955 (Q9G86_12955) | - | 2548969..2549676 (+) | 708 | WP_257146789.1 | hypothetical protein | - |
| Q9G86_RS12960 (Q9G86_12960) | - | 2549969..2550688 (+) | 720 | WP_305926178.1 | DUF4145 domain-containing protein | - |
| Q9G86_RS12965 (Q9G86_12965) | - | 2551069..2551353 (+) | 285 | WP_305926179.1 | hypothetical protein | - |
| Q9G86_RS12970 (Q9G86_12970) | - | 2551535..2551765 (+) | 231 | WP_369812836.1 | HNH endonuclease signature motif containing protein | - |
| Q9G86_RS12975 (Q9G86_12975) | - | 2551768..2552076 (+) | 309 | WP_179877396.1 | hypothetical protein | - |
| Q9G86_RS12980 (Q9G86_12980) | - | 2552386..2552883 (+) | 498 | WP_305926181.1 | P27 family phage terminase small subunit | - |
| Q9G86_RS12985 (Q9G86_12985) | - | 2552858..2554534 (+) | 1677 | WP_305926199.1 | terminase TerL endonuclease subunit | - |
| Q9G86_RS12990 (Q9G86_12990) | - | 2554551..2555795 (+) | 1245 | WP_305926182.1 | phage portal protein | - |
| Q9G86_RS12995 (Q9G86_12995) | - | 2555812..2556444 (+) | 633 | WP_003272656.1 | head maturation protease, ClpP-related | - |
| Q9G86_RS13000 (Q9G86_13000) | - | 2556458..2557582 (+) | 1125 | WP_305926183.1 | phage major capsid protein | - |
| Q9G86_RS13005 (Q9G86_13005) | - | 2557596..2557919 (+) | 324 | WP_305926184.1 | hypothetical protein | - |
| Q9G86_RS13010 (Q9G86_13010) | - | 2557909..2558265 (+) | 357 | WP_000963758.1 | hypothetical protein | - |
| Q9G86_RS13015 (Q9G86_13015) | - | 2558252..2558632 (+) | 381 | WP_016512759.1 | hypothetical protein | - |
| Q9G86_RS13020 (Q9G86_13020) | - | 2558622..2559032 (+) | 411 | WP_001111193.1 | hypothetical protein | - |
| Q9G86_RS13025 (Q9G86_13025) | - | 2559034..2559603 (+) | 570 | WP_001145608.1 | hypothetical protein | - |
| Q9G86_RS13030 (Q9G86_13030) | - | 2559665..2560015 (+) | 351 | WP_000159510.1 | hypothetical protein | - |
| Q9G86_RS13035 (Q9G86_13035) | - | 2560198..2564028 (+) | 3831 | WP_305926185.1 | phage tail tape measure protein | - |
| Q9G86_RS13040 (Q9G86_13040) | - | 2564021..2564707 (+) | 687 | WP_000227695.1 | hypothetical protein | - |
| Q9G86_RS13045 (Q9G86_13045) | - | 2564704..2567433 (+) | 2730 | WP_305926186.1 | phage tail spike protein | - |
| Q9G86_RS13050 (Q9G86_13050) | - | 2567473..2567898 (+) | 426 | WP_097923822.1 | holin family protein | - |
| Q9G86_RS13055 (Q9G86_13055) | - | 2567898..2568833 (+) | 936 | WP_097923823.1 | N-acetylmuramoyl-L-alanine amidase | - |
Sequence
Protein
Download Length: 92 a.a. Molecular weight: 10240.88 Da Isoelectric Point: 8.0411
>NTDB_id=867600 Q9G86_RS12870 WP_305926173.1 2536866..2537144(+) (abrB) [Bacillus thuringiensis strain L1]
MKNTGVARKVDELGRVVLPVELRRTLGIVEGTRLDFHVEGENIVLRKYEKSCFVTGKVSDSNIELLGGRMFLSKEGALEL
LNSLEKSVKEHG
MKNTGVARKVDELGRVVLPVELRRTLGIVEGTRLDFHVEGENIVLRKYEKSCFVTGKVSDSNIELLGGRMFLSKEGALEL
LNSLEKSVKEHG
Nucleotide
Download Length: 279 bp
>NTDB_id=867600 Q9G86_RS12870 WP_305926173.1 2536866..2537144(+) (abrB) [Bacillus thuringiensis strain L1]
ATGAAAAATACAGGCGTTGCAAGAAAAGTGGACGAGCTAGGTCGTGTAGTACTTCCAGTAGAGTTACGCAGAACTTTAGG
GATTGTCGAAGGAACGAGATTAGATTTTCATGTTGAGGGTGAAAACATTGTTCTAAGAAAATATGAAAAGTCATGCTTTG
TAACAGGTAAAGTATCTGATTCCAACATCGAATTGTTAGGTGGCCGAATGTTTTTGAGTAAGGAAGGGGCACTTGAGTTA
CTCAACTCTCTTGAAAAGAGTGTGAAGGAACATGGCTAA
ATGAAAAATACAGGCGTTGCAAGAAAAGTGGACGAGCTAGGTCGTGTAGTACTTCCAGTAGAGTTACGCAGAACTTTAGG
GATTGTCGAAGGAACGAGATTAGATTTTCATGTTGAGGGTGAAAACATTGTTCTAAGAAAATATGAAAAGTCATGCTTTG
TAACAGGTAAAGTATCTGATTCCAACATCGAATTGTTAGGTGGCCGAATGTTTTTGAGTAAGGAAGGGGCACTTGAGTTA
CTCAACTCTCTTGAAAAGAGTGTGAAGGAACATGGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
52.747 |
98.913 |
0.522 |