Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   Q9G86_RS09740 Genome accession   NZ_CP132200
Coordinates   1893230..1893517 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain L1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1888230..1898517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9G86_RS09720 (Q9G86_09720) - 1889405..1889602 (+) 198 WP_001048104.1 DUF4083 domain-containing protein -
  Q9G86_RS09725 (Q9G86_09725) - 1889634..1890095 (+) 462 WP_000024996.1 NUDIX hydrolase -
  Q9G86_RS09730 (Q9G86_09730) nadE 1890140..1890958 (-) 819 WP_000174904.1 ammonia-dependent NAD(+) synthetase -
  Q9G86_RS09735 (Q9G86_09735) - 1891233..1893113 (+) 1881 WP_305926117.1 FtsX-like permease family protein -
  Q9G86_RS09740 (Q9G86_09740) abrB 1893230..1893517 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  Q9G86_RS09745 (Q9G86_09745) - 1893793..1894740 (+) 948 WP_000099763.1 S8 family peptidase -
  Q9G86_RS09750 (Q9G86_09750) - 1894780..1895088 (-) 309 WP_053564708.1 helix-turn-helix transcriptional regulator -
  Q9G86_RS09755 (Q9G86_09755) - 1895195..1896130 (+) 936 WP_097821625.1 aldo/keto reductase -
  Q9G86_RS09760 (Q9G86_09760) - 1896271..1897353 (+) 1083 WP_305926118.1 MFS transporter -
  Q9G86_RS09765 (Q9G86_09765) - 1897648..1897872 (-) 225 WP_000162602.1 hypothetical protein -
  Q9G86_RS09770 (Q9G86_09770) - 1897957..1898304 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=867598 Q9G86_RS09740 WP_000648324.1 1893230..1893517(+) (abrB) [Bacillus thuringiensis strain L1]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=867598 Q9G86_RS09740 WP_000648324.1 1893230..1893517(+) (abrB) [Bacillus thuringiensis strain L1]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAGATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526