Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   Q9G86_RS06465 Genome accession   NZ_CP132200
Coordinates   1262356..1262679 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus thuringiensis strain L1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1257356..1267679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9G86_RS06440 (Q9G86_06440) - 1257648..1258934 (+) 1287 WP_016513126.1 D-alanyl-D-alanine carboxypeptidase family protein -
  Q9G86_RS06445 (Q9G86_06445) sipW 1259125..1259694 (+) 570 WP_098250398.1 signal peptidase I SipW -
  Q9G86_RS06450 (Q9G86_06450) - 1259757..1260344 (+) 588 WP_000172852.1 CalY family protein -
  Q9G86_RS06455 (Q9G86_06455) - 1260479..1261303 (+) 825 WP_142318151.1 DUF4047 domain-containing protein -
  Q9G86_RS06460 (Q9G86_06460) calY 1261690..1262283 (+) 594 WP_000053715.1 biofilm matrix protein CalY -
  Q9G86_RS06465 (Q9G86_06465) sinR 1262356..1262679 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  Q9G86_RS06470 (Q9G86_06470) - 1262759..1262893 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  Q9G86_RS06475 (Q9G86_06475) inhA1 1263236..1265623 (+) 2388 WP_305926067.1 M6 family metalloprotease immune inhibitor InhA1 -
  Q9G86_RS06480 (Q9G86_06480) - 1265795..1267162 (+) 1368 WP_090975866.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=867595 Q9G86_RS06465 WP_000578885.1 1262356..1262679(-) (sinR) [Bacillus thuringiensis strain L1]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=867595 Q9G86_RS06465 WP_000578885.1 1262356..1262679(-) (sinR) [Bacillus thuringiensis strain L1]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692