Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   Q9G86_RS00220 Genome accession   NZ_CP132200
Coordinates   39088..39372 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis strain L1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 34088..44372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9G86_RS00185 (Q9G86_00185) tmk 34280..34906 (+) 627 WP_000677220.1 dTMP kinase -
  Q9G86_RS00190 (Q9G86_00190) holB 34942..35925 (+) 984 WP_000978578.1 DNA polymerase III subunit delta' -
  Q9G86_RS00195 (Q9G86_00195) - 35931..36758 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  Q9G86_RS00200 (Q9G86_00200) yabA 36773..37123 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  Q9G86_RS00205 (Q9G86_00205) - 37206..37946 (+) 741 WP_098251198.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  Q9G86_RS00210 (Q9G86_00210) - 37933..38223 (+) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  Q9G86_RS00215 (Q9G86_00215) rsmI 38192..39067 (+) 876 WP_043935439.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  Q9G86_RS00220 (Q9G86_00220) abrB 39088..39372 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  Q9G86_RS00225 (Q9G86_00225) metG 39860..41842 (+) 1983 WP_305925968.1 methionine--tRNA ligase -
  Q9G86_RS00230 (Q9G86_00230) - 42009..42776 (+) 768 WP_000895840.1 TatD family hydrolase -
  Q9G86_RS00235 (Q9G86_00235) rnmV 42992..43549 (+) 558 WP_000692837.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=867579 Q9G86_RS00220 WP_000843036.1 39088..39372(-) (abrB) [Bacillus thuringiensis strain L1]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=867579 Q9G86_RS00220 WP_000843036.1 39088..39372(-) (abrB) [Bacillus thuringiensis strain L1]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851