Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   Q9L40_RS16900 Genome accession   NZ_CP132190
Coordinates   2533193..2534617 (-) Length   474 a.a.
NCBI ID   WP_248442987.1    Uniprot ID   -
Organism   Vibrio cholerae strain DRC187     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2528193..2539617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS16875 (Q9L40_16875) purT 2528702..2529877 (-) 1176 WP_305798786.1 phosphoribosylglycinamide formyltransferase 2 -
  Q9L40_RS16880 (Q9L40_16880) - 2530031..2530906 (-) 876 WP_057644105.1 AEC family transporter -
  Q9L40_RS16885 (Q9L40_16885) cdd 2531065..2531952 (-) 888 WP_305798785.1 cytidine deaminase -
  Q9L40_RS16890 (Q9L40_16890) - 2532122..2532796 (-) 675 WP_305798784.1 LrgB family protein -
  Q9L40_RS16895 (Q9L40_16895) - 2532787..2533161 (-) 375 WP_001881007.1 CidA/LrgA family protein -
  Q9L40_RS16900 (Q9L40_16900) sbcB 2533193..2534617 (-) 1425 WP_248442987.1 exodeoxyribonuclease I Machinery gene
  Q9L40_RS16905 (Q9L40_16905) - 2534761..2536134 (-) 1374 WP_113592938.1 L-cystine transporter -
  Q9L40_RS16910 (Q9L40_16910) - 2536312..2536521 (+) 210 Protein_2200 peptide-methionine (R)-S-oxide reductase -
  Q9L40_RS16915 (Q9L40_16915) cobT 2536853..2537878 (+) 1026 WP_000887077.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  Q9L40_RS16920 (Q9L40_16920) - 2537878..2538663 (+) 786 WP_000718971.1 adenosylcobinamide-GDP ribazoletransferase -
  Q9L40_RS16925 (Q9L40_16925) cobU 2538672..2539211 (+) 540 WP_071179486.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54561.98 Da        Isoelectric Point: 6.0062

>NTDB_id=867528 Q9L40_RS16900 WP_248442987.1 2533193..2534617(-) (sbcB) [Vibrio cholerae strain DRC187]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDTEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYRYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=867528 Q9L40_RS16900 WP_248442987.1 2533193..2534617(-) (sbcB) [Vibrio cholerae strain DRC187]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTTTTCGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTGATTTACTGTCAACTGCCCAACG
ACTATTTACCTGCTCCTGAAGCCGCACTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTAGCGGAGCCC
GAATTTATCGCTCGTATTCATGCTGAGCTCTCCACACCCAATACCATCAGCCTAGGTTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGTTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAGCACGGTAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTCACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCACGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGTCCTATTCTGGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGCCAACACCCAGAGATTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAATTTAACCAAGAAAGTGATGTGGATAGCCAACTCTATGCCGGTTTTTTCTCCCCAG
CCGATCGTGCGGCAATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCCGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATACCGAGCAACGCCGCTGGGC
AGCGCATTGTCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCGTTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

99.367

100

0.994