Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   Q9L40_RS15655 Genome accession   NZ_CP132190
Coordinates   2261471..2264815 (+) Length   1114 a.a.
NCBI ID   WP_199367844.1    Uniprot ID   -
Organism   Vibrio cholerae strain DRC187     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2256471..2269815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS15630 (Q9L40_15630) sucC 2256610..2257776 (+) 1167 WP_001048578.1 ADP-forming succinate--CoA ligase subunit beta -
  Q9L40_RS15635 (Q9L40_15635) sucD 2257776..2258648 (+) 873 WP_000025475.1 succinate--CoA ligase subunit alpha -
  Q9L40_RS15640 (Q9L40_15640) znuB 2258737..2259519 (-) 783 WP_000571529.1 zinc ABC transporter permease subunit ZnuB -
  Q9L40_RS15645 (Q9L40_15645) znuC 2259512..2260300 (-) 789 WP_000996142.1 zinc ABC transporter ATP-binding protein ZnuC -
  Q9L40_RS15650 (Q9L40_15650) znuA 2260384..2261268 (+) 885 WP_000952839.1 zinc ABC transporter substrate-binding protein ZnuA -
  Q9L40_RS15655 (Q9L40_15655) tfoS 2261471..2264815 (+) 3345 WP_199367844.1 AraC family transcriptional regulator Regulator
  Q9L40_RS15660 (Q9L40_15660) - 2265590..2265820 (+) 231 WP_057643401.1 ferrous iron transport protein A -
  Q9L40_RS15665 (Q9L40_15665) feoB 2265817..2268093 (+) 2277 WP_305798850.1 Fe(2+) transporter permease subunit FeoB -
  Q9L40_RS15670 (Q9L40_15670) - 2268090..2268320 (+) 231 WP_057643410.1 FeoC-like transcriptional regulator -
  Q9L40_RS15675 (Q9L40_15675) - 2268582..2269010 (-) 429 WP_000929904.1 HIT domain-containing protein -

Sequence

Protein


Download         Length: 1114 a.a.        Molecular weight: 126394.99 Da        Isoelectric Point: 6.9287

>NTDB_id=867525 Q9L40_RS15655 WP_199367844.1 2261471..2264815(+) (tfoS) [Vibrio cholerae strain DRC187]
MFRIFLYGCLLNILIPSLVLALDKSVSIFYPLPIQEQGKVIVAHNLYLGSDGGIWVHDVHGKVMYFDGQNVLPRRGSVLP
QLSTHIVYANSAFWAFEQHELFRTYPGGERELMLSLTPGTQIIQMGASNGMIWMVDGGNFYSYEIRSGRVESLSLHELYQ
LNSASKVVINDAQFLVSKWALATNVGVYLSDEQGFSHVKKSGKNFIQKLYFSHKRRELLVGSKRGALVIDIEDKRPPLDR
IGSSHVLSIAETEKEYWIGTEDGLFVYSFITGKIVQLESNHQDGYALLGKKIYAMVNDFQGGMWIGTDKGIFYYSLFGQQ
FTRYPGQALSNDGSKTPIGKMVPLNSDGDYLAITAQGLYNFNFSGELRKHLIYPGKVNDFVIDQEHIWIATEKGLVRYNL
SRRSIDTPNLPLPLLQTAIQHLSLDNDGNLWGTSDYQIWSYSLSEKNYRDYGSEWMVKAFSPSQITLLAAVRDGIVIGTE
HGAYSLFEKQIRFDFASHRYGEIVQVVEDTAGHIWVVGSYGVFQWRKNQPESVTVELIEENIQPLCIAESKQGMWLISTK
GISYYRNQELTKHFGAPYGLISNEFLPASCTVGEEQDTSSLIIGSQFGVVKTNTEELAVSNLPNIQVTFSQVSVNHTTKL
LGYRMSEPVKIAYGDSISFQFGALPSSRSQSLEYKLNDEQQWQRFDGALLNFDQLLPGKYRLKVRSANPMQRYRTEALFD
FEVSEPWYMTSMALVGYVLSLLGLLALALWWRTRMILAANRKLKAQVELKTSQLRHQSKIVLSNNHQLRKQLQLHHTILG
SVLNNIDASLRHLSSYAKVRSWSEFEAPFNKVKQELAQLHFMHRGDEDESKYHDLHLLIESALKSWHEEYSKALIKLTYS
GEPRFVEVRQFNLDVLFNAVLTDAIKRLYKHQELTIQLEVRNAQAVIVFSDFGAPIQNINKTMVTLSGSSYPLEELVTRS
GGELHVLALKERNVIELAWPLATLPELEAVHKQEESEPGAKVSIDEVEKEWLSKVEKLIVLHYSDPNFTTSTAAQALYVS
ERSLQRRFKAATGKTFKESLNEVRLEKACQSLLSGAKIAQVAFDCGFNDPSYFSQRFKHHFGLSPSQFIEDQEN

Nucleotide


Download         Length: 3345 bp        

>NTDB_id=867525 Q9L40_RS15655 WP_199367844.1 2261471..2264815(+) (tfoS) [Vibrio cholerae strain DRC187]
GTGTTTCGCATATTTTTGTATGGCTGCTTGCTCAATATCCTGATCCCATCTTTGGTATTGGCATTAGATAAATCTGTATC
TATTTTCTATCCCCTGCCGATTCAAGAGCAGGGGAAGGTGATCGTTGCGCATAACCTTTACCTTGGCAGTGATGGTGGTA
TTTGGGTGCATGATGTTCACGGTAAAGTGATGTACTTTGATGGGCAGAATGTTTTGCCTCGACGTGGCTCTGTTCTACCA
CAATTGTCCACTCATATCGTTTATGCGAACAGTGCATTTTGGGCTTTTGAGCAACACGAGTTGTTCAGAACCTATCCTGG
GGGAGAAAGAGAGCTGATGTTGAGCTTAACTCCGGGAACGCAGATTATTCAGATGGGGGCCTCTAACGGCATGATCTGGA
TGGTCGATGGGGGAAACTTTTACAGTTATGAGATCCGAAGTGGTCGCGTCGAATCGCTTTCTTTACATGAACTTTATCAG
CTCAATAGTGCCAGTAAGGTCGTGATTAACGATGCACAGTTTTTAGTCTCGAAATGGGCTTTAGCGACCAATGTCGGGGT
GTATTTATCTGACGAACAAGGTTTTTCTCATGTAAAAAAATCAGGTAAAAACTTTATCCAAAAACTCTATTTTTCCCATA
AACGTCGAGAGCTGTTAGTTGGGTCTAAACGTGGCGCTTTAGTCATTGATATTGAAGATAAACGCCCACCACTGGATAGA
ATTGGTTCCTCTCATGTCCTCTCTATTGCGGAAACCGAGAAAGAGTACTGGATCGGTACAGAAGATGGACTCTTTGTTTA
CTCTTTTATCACCGGAAAAATCGTGCAACTTGAAAGTAACCATCAAGATGGCTATGCCTTACTGGGCAAGAAAATCTACG
CCATGGTGAATGACTTTCAAGGTGGGATGTGGATAGGAACTGACAAGGGGATTTTTTACTACTCCCTGTTTGGTCAGCAG
TTTACTCGGTATCCAGGACAAGCGTTATCTAATGACGGTAGTAAAACGCCGATCGGTAAAATGGTACCACTCAACTCCGA
CGGAGATTATTTGGCGATAACTGCACAAGGTCTGTATAACTTCAATTTTTCGGGTGAGTTACGTAAACATCTCATTTATC
CCGGTAAAGTGAATGATTTTGTGATTGACCAAGAGCATATTTGGATCGCGACAGAGAAAGGTCTGGTTCGTTACAATCTC
AGTCGTCGTAGTATTGATACGCCGAATTTACCGCTCCCTTTGCTACAAACGGCTATTCAACATCTTAGCTTAGATAATGA
TGGTAACTTATGGGGGACAAGTGATTACCAAATTTGGTCATACTCACTCTCTGAAAAAAACTATCGAGATTATGGTTCTG
AATGGATGGTGAAAGCTTTTTCTCCATCACAGATTACTCTGCTTGCCGCAGTACGAGACGGCATAGTGATCGGGACGGAA
CATGGCGCGTATTCCCTGTTTGAAAAACAGATCCGCTTTGATTTTGCCAGCCATCGTTATGGTGAGATAGTACAAGTTGT
TGAAGATACTGCAGGCCATATTTGGGTTGTTGGCTCTTATGGGGTCTTTCAGTGGCGTAAAAATCAGCCCGAATCCGTCA
CCGTCGAGTTAATCGAAGAAAATATCCAACCTTTGTGTATTGCCGAGTCCAAGCAGGGGATGTGGCTCATCTCTACAAAA
GGGATCAGCTATTACCGTAATCAAGAGCTTACGAAACATTTTGGGGCTCCTTATGGTTTGATCAGTAATGAATTCTTGCC
GGCATCGTGTACGGTAGGTGAGGAGCAAGATACCTCATCGTTGATCATCGGATCGCAATTTGGTGTGGTGAAAACCAATA
CAGAAGAATTAGCCGTGTCTAATTTGCCTAATATTCAGGTGACGTTTAGCCAAGTTAGCGTAAATCATACGACTAAGCTT
TTGGGATATCGTATGTCCGAGCCAGTGAAAATTGCTTATGGTGACTCGATCAGTTTTCAGTTTGGTGCTTTACCATCCTC
ACGTAGTCAGTCTTTAGAATACAAACTTAACGATGAACAACAGTGGCAGCGTTTTGATGGGGCGCTGCTCAATTTTGATC
AACTTTTACCAGGTAAATATCGTTTGAAAGTCCGCAGTGCGAACCCAATGCAGCGATACCGAACTGAAGCCCTGTTTGAT
TTTGAAGTTTCAGAGCCTTGGTATATGACTTCCATGGCACTTGTCGGATATGTCCTTAGCCTGCTTGGTTTGTTAGCACT
CGCTTTATGGTGGCGAACACGAATGATATTGGCAGCTAACCGCAAACTTAAAGCGCAAGTGGAGCTCAAAACTAGCCAGT
TACGTCATCAAAGTAAAATTGTACTGAGCAATAACCACCAACTTCGAAAGCAACTGCAGCTCCACCATACAATTCTTGGT
AGCGTGTTAAATAATATTGATGCCTCATTGCGGCACTTATCGTCCTACGCCAAAGTACGTTCATGGAGTGAATTCGAAGC
ACCTTTCAACAAAGTGAAGCAAGAGTTGGCTCAACTGCATTTTATGCATCGCGGCGATGAAGATGAAAGCAAATATCATG
ATTTACATCTTTTGATTGAATCTGCGTTGAAGAGTTGGCACGAAGAGTACAGCAAAGCCTTGATTAAACTGACTTACAGC
GGTGAGCCTCGCTTTGTTGAAGTCCGACAATTCAATCTTGATGTGCTATTTAATGCAGTGTTAACGGATGCAATCAAACG
TTTGTATAAGCATCAAGAATTAACCATACAACTTGAAGTGAGAAATGCGCAGGCGGTTATCGTATTTTCGGATTTTGGCG
CGCCAATCCAAAACATAAACAAAACTATGGTGACTTTATCTGGAAGTAGTTATCCGCTTGAAGAGTTAGTTACTCGCAGC
GGTGGTGAATTGCATGTACTCGCATTGAAAGAGCGCAATGTTATTGAGTTAGCTTGGCCATTGGCAACCTTACCCGAGTT
AGAGGCCGTCCATAAACAAGAAGAAAGCGAACCGGGGGCTAAGGTTAGCATTGATGAGGTGGAGAAAGAGTGGCTAAGTA
AAGTCGAGAAACTGATAGTGCTGCATTATAGCGATCCCAATTTCACCACATCTACAGCAGCGCAGGCGCTTTATGTCTCT
GAACGCAGTTTACAGCGTCGCTTTAAAGCCGCGACAGGAAAAACCTTCAAAGAGTCGTTAAATGAAGTTCGCTTAGAAAA
AGCGTGTCAAAGCTTATTGAGTGGGGCGAAAATCGCACAAGTTGCTTTTGATTGCGGATTTAATGATCCCTCTTATTTCA
GTCAGCGTTTCAAACATCATTTTGGATTATCACCAAGCCAATTCATCGAAGATCAAGAAAACTAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_18)

(1034-1109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

95.063

100

0.951