Detailed information NTG0867503

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: Q9L40_RS09465
• Genome accession: NZ_CP132190
• Coordinates: 951980..952987 (-)
• Length: 335 a.a.
• NCBI ID: WP_029628668.1
• Uniprot ID: A0A5C9T0U3
• Organism: Vibrio cholerae strain DRC187
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 946980..957987

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q9L40_RS09455 (Q9L40_09455)	cysM	948145..949032 (+)	888	WP_001279364.1	cysteine synthase CysM	-
Q9L40_RS09460 (Q9L40_09460)	mutS	949299..951887 (+)	2589	WP_305799192.1	DNA mismatch repair protein MutS	-
Q9L40_RS09465 (Q9L40_09465)	rpoS	951980..952987 (-)	1008	WP_029628668.1	RNA polymerase sigma factor RpoS	Regulator
Q9L40_RS09470 (Q9L40_09470)	nlpD	953061..953996 (-)	936	WP_029628669.1	murein hydrolase activator NlpD	-
Q9L40_RS09475 (Q9L40_09475)	-	953996..954622 (-)	627	WP_000002980.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
Q9L40_RS09480 (Q9L40_09480)	surE	954615..955367 (-)	753	WP_170921644.1	5'/3'-nucleotidase SurE	-
Q9L40_RS09485 (Q9L40_09485)	truD	955369..956454 (-)	1086	WP_113620168.1	tRNA pseudouridine(13) synthase TruD	-
Q9L40_RS09490 (Q9L40_09490)	ispF	956484..956960 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
Q9L40_RS09495 (Q9L40_09495)	ispD	956957..957655 (-)	699	WP_305799191.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
Q9L40_RS09500 (Q9L40_09500)	ftsB	957652..957936 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=867503 Q9L40_RS09465 WP_029628668.1 951980..952987(-) (rpoS) [Vibrio cholerae strain DRC187]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELIAVEGASEDVREEFDASSKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=867503 Q9L40_RS09465 WP_029628668.1 951980..952987(-) (rpoS) [Vibrio cholerae strain DRC187]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAATTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTTCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACCGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGCGATGAAGCCGCACGCAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAGGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATCCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACAGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCACACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTGCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

3D structure

• AlphaFold DB: A0A5C9T0U3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.104	100	0.991