Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   Q9L40_RS09325 Genome accession   NZ_CP132190
Coordinates   925303..925821 (-) Length   172 a.a.
NCBI ID   WP_305799198.1    Uniprot ID   -
Organism   Vibrio cholerae strain DRC187     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 920303..930821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS09300 (Q9L40_09300) rimM 920412..920966 (-) 555 WP_002031055.1 ribosome maturation factor RimM -
  Q9L40_RS09305 (Q9L40_09305) rpsP 920994..921242 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  Q9L40_RS09310 (Q9L40_09310) ffh 921478..922863 (-) 1386 WP_000462725.1 signal recognition particle protein -
  Q9L40_RS09315 (Q9L40_09315) - 923076..923870 (+) 795 WP_000369277.1 inner membrane protein YpjD -
  Q9L40_RS09320 (Q9L40_09320) - 923953..925233 (+) 1281 WP_000340993.1 HlyC/CorC family transporter -
  Q9L40_RS09325 (Q9L40_09325) luxS 925303..925821 (-) 519 WP_305799198.1 S-ribosylhomocysteine lyase Regulator
  Q9L40_RS09330 (Q9L40_09330) gshA 926068..927639 (-) 1572 WP_305799197.1 glutamate--cysteine ligase -
  Q9L40_RS09335 (Q9L40_09335) - 927751..930606 (-) 2856 WP_305799196.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19066.83 Da        Isoelectric Point: 4.9777

>NTDB_id=867500 Q9L40_RS09325 WP_305799198.1 925303..925821(-) (luxS) [Vibrio cholerae strain DRC187]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLNVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=867500 Q9L40_RS09325 WP_305799198.1 925303..925821(-) (luxS) [Vibrio cholerae strain DRC187]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAATGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGGATCTCGGTTAACCGTAACGATGAGTTGGCG
CTACCTGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

99.419

100

0.994