Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   WHQ27_RS01055 Genome accession   NZ_CP148192
Coordinates   203772..204155 (+) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0078     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 198772..209155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ27_RS01035 (WHQ27_01035) - 198851..200785 (-) 1935 WP_052823172.1 ribonuclease R family protein -
  WHQ27_RS01040 (WHQ27_01040) ilvC 200904..201926 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  WHQ27_RS01045 (WHQ27_01045) - 201930..203012 (+) 1083 WP_052823171.1 divergent polysaccharide deacetylase family protein -
  WHQ27_RS01050 (WHQ27_01050) dprA 203002..203775 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  WHQ27_RS01055 (WHQ27_01055) dprB 203772..204155 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  WHQ27_RS01060 (WHQ27_01060) - 204184..205023 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHQ27_RS01065 (WHQ27_01065) msrA 205199..205696 (-) 498 WP_002875505.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHQ27_RS01070 (WHQ27_01070) ppa 205738..206256 (-) 519 WP_002867724.1 inorganic diphosphatase -
  WHQ27_RS01075 (WHQ27_01075) adk 206266..206844 (-) 579 WP_002859580.1 adenylate kinase -
  WHQ27_RS01080 (WHQ27_01080) aspS 206841..208592 (-) 1752 WP_002875506.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=867446 WHQ27_RS01055 WP_002858579.1 203772..204155(+) (dprB) [Campylobacter jejuni strain Z1323CCJ0078]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=867446 WHQ27_RS01055 WP_002858579.1 203772..204155(+) (dprB) [Campylobacter jejuni strain Z1323CCJ0078]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449