Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   WHQ29_RS04705 Genome accession   NZ_CP148190
Coordinates   907300..908166 (+) Length   288 a.a.
NCBI ID   WP_002858085.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0080     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 902300..913166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ29_RS04680 (WHQ29_04680) - 902735..903994 (-) 1260 WP_002873165.1 ComEC/Rec2 family competence protein -
  WHQ29_RS04685 (WHQ29_04685) - 903994..904551 (-) 558 WP_002856055.1 DedA family protein -
  WHQ29_RS04690 (WHQ29_04690) rny 904560..906113 (-) 1554 WP_002858133.1 ribonuclease Y -
  WHQ29_RS04695 (WHQ29_04695) - 906034..906660 (-) 627 WP_002875342.1 5-formyltetrahydrofolate cyclo-ligase -
  WHQ29_RS04700 (WHQ29_04700) - 906743..907300 (+) 558 WP_002858112.1 TlpA disulfide reductase family protein -
  WHQ29_RS04705 (WHQ29_04705) pilA 907300..908166 (+) 867 WP_002858085.1 signal recognition particle-docking protein FtsY Machinery gene
  WHQ29_RS04710 (WHQ29_04710) radA 908166..909506 (+) 1341 WP_002858434.1 DNA repair protein RadA Machinery gene
  WHQ29_RS04715 (WHQ29_04715) atpB 909575..910255 (+) 681 WP_002858390.1 F0F1 ATP synthase subunit A -
  WHQ29_RS04720 (WHQ29_04720) - 910252..910443 (+) 192 WP_002852856.1 membrane protein -
  WHQ29_RS04725 (WHQ29_04725) metF 910465..911313 (-) 849 WP_002889826.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32022.00 Da        Isoelectric Point: 5.5179

>NTDB_id=867423 WHQ29_RS04705 WP_002858085.1 907300..908166(+) (pilA) [Campylobacter jejuni strain Z1323CCJ0080]
MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=867423 WHQ29_RS04705 WP_002858085.1 907300..908166(+) (pilA) [Campylobacter jejuni strain Z1323CCJ0080]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGAGTTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAGCTTGCTTATTTATA
CAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAGCAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCTCATGAGCT
TGAAAAAATTGTAAGAATTTCAAACAAAGCTTTAGAAGGCGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTACAAGAATTTAATGCAAGTGCTTATTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.584

100

0.437