Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AABJ59_RS22915 Genome accession   NZ_AP027512
Coordinates   4753328..4754320 (-) Length   330 a.a.
NCBI ID   WP_000224467.1    Uniprot ID   B7MGH3
Organism   Escherichia coli strain LR-28     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4748328..4759320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ59_RS22905 (VEE31_43490) yieP 4751220..4751912 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  AABJ59_RS22910 (VEE31_43500) mdtD 4751935..4753362 (+) 1428 WP_001280850.1 multidrug transporter subunit MdtD -
  AABJ59_RS22915 (VEE31_43510) cytR 4753328..4754320 (-) 993 WP_000224467.1 ribose operon transcriptional repressor RbsR Regulator
  AABJ59_RS22920 (VEE31_43520) rbsK 4754324..4755253 (-) 930 WP_001361088.1 ribokinase -
  AABJ59_RS22925 (VEE31_43530) rbsB 4755379..4756269 (-) 891 WP_001297966.1 ribose ABC transporter substrate-binding protein RbsB -
  AABJ59_RS22930 (VEE31_43540) rbsC 4756294..4757259 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  AABJ59_RS22935 (VEE31_43550) rbsA 4757264..4758769 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  AABJ59_RS22940 (VEE31_43560) rbsD 4758777..4759196 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36581.88 Da        Isoelectric Point: 5.2141

>NTDB_id=86742 AABJ59_RS22915 WP_000224467.1 4753328..4754320(-) (cytR) [Escherichia coli strain LR-28]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPALQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=86742 AABJ59_RS22915 WP_000224467.1 4753328..4754320(-) (cytR) [Escherichia coli strain LR-28]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACAGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGTAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATTGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCTGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACAACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGGCCCTACAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGTGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7MGH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment