Detailed information NTG0867376

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: Q9L38_RS12825
• Genome accession: NZ_CP132180
• Coordinates: 2817789..2818796 (-)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain DRC193A
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2812789..2823796

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q9L38_RS12800 (Q9L38_12800)	rraA	2813364..2813879 (-)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-
Q9L38_RS12805 (Q9L38_12805)	-	2813954..2814871 (-)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
Q9L38_RS12810 (Q9L38_12810)	hslU	2814975..2816306 (-)	1332	WP_001293370.1	HslU--HslV peptidase ATPase subunit	-
Q9L38_RS12815 (Q9L38_12815)	hslV	2816372..2816929 (-)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
Q9L38_RS12820 (Q9L38_12820)	-	2817066..2817617 (-)	552	WP_001884022.1	SPOR domain-containing protein	-
Q9L38_RS12825 (Q9L38_12825)	cytR	2817789..2818796 (-)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
Q9L38_RS12830 (Q9L38_12830)	priA	2819102..2821306 (-)	2205	WP_001247858.1	primosomal protein N'	-
Q9L38_RS12835 (Q9L38_12835)	rpmE	2821561..2821779 (+)	219	WP_000643446.1	50S ribosomal protein L31	-
Q9L38_RS12840 (Q9L38_12840)	-	2822087..2823364 (+)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
Q9L38_RS12845 (Q9L38_12845)	metJ	2823475..2823792 (-)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=867376 Q9L38_RS12825 WP_000224452.1 2817789..2818796(-) (cytR) [Vibrio cholerae strain DRC193A]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=867376 Q9L38_RS12825 WP_000224452.1 2817789..2818796(-) (cytR) [Vibrio cholerae strain DRC193A]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904