Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   WHP72_RS08570 Genome accession   NZ_CP148184
Coordinates   1652740..1654638 (+) Length   632 a.a.
NCBI ID   WP_002867545.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0088     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1647740..1659638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP72_RS08540 (WHP72_08540) - 1648405..1648677 (+) 273 WP_002858971.1 NifU family protein -
  WHP72_RS08545 (WHP72_08545) - 1648664..1649215 (+) 552 WP_002851410.1 hypothetical protein -
  WHP72_RS08550 (WHP72_08550) murE 1649199..1650482 (+) 1284 WP_002867548.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  WHP72_RS08555 (WHP72_08555) - 1650486..1650797 (+) 312 WP_002851172.1 YbaB/EbfC family nucleoid-associated protein -
  WHP72_RS08560 (WHP72_08560) - 1650794..1651888 (+) 1095 WP_002867547.1 PDZ domain-containing protein -
  WHP72_RS08565 (WHP72_08565) ispA 1651885..1652730 (+) 846 WP_002867546.1 polyprenyl synthetase family protein -
  WHP72_RS08570 (WHP72_08570) recP/tkt 1652740..1654638 (+) 1899 WP_002867545.1 transketolase Machinery gene
  WHP72_RS08575 (WHP72_08575) iamB 1654640..1655749 (+) 1110 WP_002867544.1 MlaE family lipid ABC transporter permease subunit -
  WHP72_RS08580 (WHP72_08580) iamA 1655750..1656472 (+) 723 WP_002860093.1 ATP-binding cassette domain-containing protein -
  WHP72_RS08585 (WHP72_08585) - 1656475..1657365 (+) 891 WP_002856572.1 MlaD family protein -
  WHP72_RS08590 (WHP72_08590) - 1657365..1657964 (+) 600 WP_002867543.1 ABC-type transport auxiliary lipoprotein family protein -
  WHP72_RS08595 (WHP72_08595) - 1658020..1658520 (+) 501 WP_002858979.1 flagellar FLiS export co-chaperone -

Sequence

Protein


Download         Length: 632 a.a.        Molecular weight: 69602.42 Da        Isoelectric Point: 6.3607

>NTDB_id=867346 WHP72_RS08570 WP_002867545.1 1652740..1654638(+) (recP/tkt) [Campylobacter jejuni strain Z1323CCJ0088]
MDIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSG
YDLSLEDLKNFRQLHSKTPGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
YEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYEEINKALEQAKKSTKPCLIIAKT
TIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERL
LNPDFNKIAYPDFKGKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHGMGDFVEGKNIHFGIREHAMAAINNA
FARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENV
KAWQIALNADIPSAFLLSRQKLKALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMP
CFELFEKQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFEHFGFSVSKLVNFILSK

Nucleotide


Download         Length: 1899 bp        

>NTDB_id=867346 WHP72_RS08570 WP_002867545.1 1652740..1654638(+) (recP/tkt) [Campylobacter jejuni strain Z1323CCJ0088]
ATGGACATTCAAATTTTACAAGAACAGGCAAATACTCTAAGATTTTTAAGTGCCGATATGGTGCAAAAAGCAAACTCAGG
ACACCCAGGTGCACCTTTGGGTTTAGCAGATATTTTAAGTGTTTTAAGTTATCATTTAAAACACAATCCTAAAAATCCCA
CTTGGCTAAACCGCGATAGACTTGTATTTTCAGGCGGACATGCAAGTGCTTTGCTTTATAGTTTTTTACATTTAAGCGGC
TATGATTTAAGCCTAGAAGATCTTAAAAATTTCCGCCAACTTCATTCTAAAACCCCAGGACACCCTGAAATTTCAACTCT
TGGAGTAGAAATCGCTACAGGCCCTTTAGGACAAGGCGTTGCCAATGCTGTAGGCTTTGCTATGGCAGCAAAAAAAGCAC
AAAATTTGCTAGGCAGTGATTTAATCGATCATAAAATTTATTGTCTTTGCGGAGATGGGGATTTACAAGAAGGCATTTCT
TATGAAGCTTGTTCTTTAGCAGGACTTCACAAACTTGATAACTTCATACTTATTTATGATAGCAACAATATCTCCATAGA
AGGCGATGTAGGTTTAGCCTTTAACGAAAATGTAAAAATGCGTTTTGAAGCACAAGGATTTGAAGTTTTAAGTATAAATG
GACACGATTATGAAGAAATCAATAAAGCCTTAGAACAAGCTAAAAAATCCACAAAACCTTGTCTTATCATCGCAAAAACA
ACTATAGCAAAGGGTGCAGGAGAGCTTGAAGGCAGTCATAAAAGCCATGGCGCACCTTTGGGTGAAGAAGTGATTAAAAA
AGCCAAAGAACAAGCAGGTTTTGATCCAAATATCAGTTTTCATATCCCACAAGCAAGCAAAATCCGCTTTGAAAGTGCTG
TAGAACTTGGGGATTTAGAAGAAGCAAAATGGAAAGATAAGCTTGAAAAAAGTGCTAAAAAAGAACTTTTAGAAAGGCTA
TTAAATCCTGATTTTAACAAGATAGCTTATCCTGATTTTAAAGGAAAAGATCTTGCTACAAGAGATAGTAATGGTGAAAT
TTTAAATGTTTTAGCTAAAAATTTAGAAGGATTTTTAGGTGGAAGTGCAGACTTAGGCCCTTCAAACAAAACAGAACTTC
ACGGCATGGGAGACTTTGTAGAAGGTAAAAATATCCATTTTGGTATCAGAGAACACGCTATGGCAGCGATTAACAATGCT
TTTGCAAGATATGGAATTTTCTTACCATTTTCGGCAACTTTTTTCATCTTTAGCGAGTACTTAAAACCTGCCGCAAGAAT
AGCAGCTCTAATGAAAATCAAACATTTTTTCATTTTCACACACGATAGCATAGGCGTGGGCGAAGATGGACCAACACACC
AACCTATAGAACAACTTAGCACTTTTAGAGCTATGCCAAATTTTTTAACCTTTAGACCTGCTGATGGGGTGGAAAATGTC
AAAGCTTGGCAAATAGCCCTAAATGCTGATATTCCGAGTGCTTTTCTGCTTTCACGCCAAAAACTCAAAGCTCTAAATGA
ACCTGTTTTTGGAGATGTAAAAAATGGAGCGTATTTACTCAAAGAAAGCAAAGAGGCTAAATTTACACTTTTAGCAAGTG
GAAGTGAAGTTTGGCTTTGTTTAGAAAGTGCAAACGAACTTGAAAAACAAGGTTTTGCTTGTAATGTTGTTTCCATGCCT
TGTTTTGAACTTTTTGAAAAACAAGATAAAGCTTATCAAGAAAGATTGTTAAAAGGTGAAGTTATAGGTGTTGAAGCAGC
GCATTCTAATGAACTTTATAAATTTTGCCATAAAGTGTATGGCATAGAAAGTTTTGGAGAAAGTGGCAAAGACAAAGATG
TGTTTGAACACTTTGGATTTAGCGTTTCAAAGCTTGTAAATTTTATCCTTAGCAAATAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(338-503)

Transketolase, C-terminal domain (Transketolase_C)

(521-623)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

40.586

100

0.416