Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AABJ59_RS21885 Genome accession   NZ_AP027512
Coordinates   4539110..4540135 (+) Length   341 a.a.
NCBI ID   WP_000644904.1    Uniprot ID   P0ACN8
Organism   Escherichia coli strain LR-28     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4534110..4545135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ59_RS21875 (VEE31_41640) rpmE 4536341..4536553 (-) 213 WP_000710769.1 50S ribosomal protein L31 -
  AABJ59_RS21880 (VEE31_41650) priA 4536756..4538954 (+) 2199 WP_001330197.1 primosomal protein N' Machinery gene
  AABJ59_RS21885 (VEE31_41660) cytR 4539110..4540135 (+) 1026 WP_000644904.1 DNA-binding transcriptional regulator CytR Regulator
  AABJ59_RS21890 (VEE31_41670) ftsN 4540227..4541186 (+) 960 WP_000068834.1 cell division protein FtsN -
  AABJ59_RS21895 (VEE31_41680) hslV 4541279..4541809 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  AABJ59_RS21900 (VEE31_41690) hslU 4541819..4543150 (+) 1332 WP_001293344.1 HslU--HslV peptidase ATPase subunit -
  AABJ59_RS21905 (VEE31_41700) menA 4543217..4544143 (+) 927 WP_001305044.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  AABJ59_RS21910 (VEE31_41710) rraA 4544236..4544721 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37819.78 Da        Isoelectric Point: 6.3842

>NTDB_id=86734 AABJ59_RS21885 WP_000644904.1 4539110..4540135(+) (cytR) [Escherichia coli strain LR-28]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=86734 AABJ59_RS21885 WP_000644904.1 4539110..4540135(+) (cytR) [Escherichia coli strain LR-28]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTACCTACCGTTCATATAGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGTGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

64.179

98.24

0.63
  cytR Vibrio cholerae C6706

65.443

95.894

0.628

Multiple sequence alignment