Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   EUCAMar_RS03880 Genome accession   NZ_CP132155
Coordinates   781847..782542 (+) Length   231 a.a.
NCBI ID   WP_013380612.1    Uniprot ID   A0AB74EZS3
Organism   Eubacterium callanderi strain DSM 3468     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 776847..787542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUCAMar_RS03860 (EUCAMar_07710) - 777428..778912 (+) 1485 WP_013380617.1 glycerol kinase GlpK -
  EUCAMar_RS03865 (EUCAMar_07720) - 779288..780022 (-) 735 WP_013380615.1 ABC transporter permease -
  EUCAMar_RS03870 (EUCAMar_07730) - 780035..780784 (-) 750 WP_013380614.1 ABC transporter permease -
  EUCAMar_RS03875 (EUCAMar_07740) - 780784..781692 (-) 909 WP_013380613.1 ATP-binding cassette domain-containing protein -
  EUCAMar_RS03880 (EUCAMar_07750) scnR 781847..782542 (+) 696 WP_013380612.1 response regulator transcription factor Regulator
  EUCAMar_RS03885 (EUCAMar_07760) - 782555..783994 (+) 1440 WP_013380611.1 sensor histidine kinase KdpD -
  EUCAMar_RS03890 (EUCAMar_07770) - 784050..784448 (-) 399 WP_070081230.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EUCAMar_RS03900 (EUCAMar_07790) - 784815..785864 (+) 1050 WP_013380608.1 response regulator -
  EUCAMar_RS03905 (EUCAMar_07800) - 786082..787500 (+) 1419 WP_013380606.1 C69 family dipeptidase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 25718.92 Da        Isoelectric Point: 4.9106

>NTDB_id=867317 EUCAMar_RS03880 WP_013380612.1 781847..782542(+) (scnR) [Eubacterium callanderi strain DSM 3468]
MDYIKDKGILLVDDEPELLKLVHKILENEGFAKVYTASSMAEGMTVFLEKAPDMAVLDVMLPDGEGFELLKFIRGSSDIP
VLFLSARGNADDRFTGFGLGADDYIIKPFLPQELVFRITAILKRAYKNEAPTFILADATVDLDRAEIIRGEEILPLTAKE
HAILQKLYENAGKIVTIGALCDFVWEGDSYGYEKPLMAHIGRIREKIETNPSHPKSLITVKGLGYKLLVSK

Nucleotide


Download         Length: 696 bp        

>NTDB_id=867317 EUCAMar_RS03880 WP_013380612.1 781847..782542(+) (scnR) [Eubacterium callanderi strain DSM 3468]
ATGGATTACATTAAAGATAAAGGCATTCTTCTGGTCGACGATGAACCAGAGCTTTTAAAGCTGGTGCATAAGATACTCGA
AAATGAAGGATTTGCGAAGGTTTATACAGCGTCGAGCATGGCCGAGGGAATGACCGTTTTTCTGGAAAAAGCTCCGGATA
TGGCCGTGCTTGATGTGATGCTGCCAGATGGTGAAGGTTTTGAGCTGCTAAAATTCATCCGTGGATCCTCGGATATCCCG
GTGCTTTTTTTATCAGCCAGAGGCAATGCCGACGACCGGTTCACCGGCTTTGGTCTGGGAGCGGATGATTATATTATCAA
GCCCTTTCTGCCCCAGGAGCTTGTGTTCAGGATCACAGCTATTTTAAAACGTGCCTACAAAAACGAAGCGCCGACCTTTA
TCCTGGCTGACGCCACAGTAGATCTGGACCGCGCTGAGATTATCAGGGGAGAGGAGATTCTTCCCCTTACGGCCAAAGAG
CATGCCATTCTTCAAAAGCTCTATGAAAATGCAGGGAAAATTGTAACCATTGGCGCCCTCTGTGATTTTGTATGGGAGGG
CGACAGCTATGGCTATGAAAAACCGCTCATGGCTCATATCGGGCGTATCCGGGAAAAAATCGAGACTAACCCCAGCCATC
CAAAGTCTCTTATTACAGTCAAAGGGCTTGGCTATAAGCTGCTCGTAAGTAAATAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-227)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.435

99.567

0.502