Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   WHQ40_RS06180 Genome accession   NZ_CP148183
Coordinates   1175712..1176662 (+) Length   316 a.a.
NCBI ID   WP_011049891.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0091     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1170712..1181662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ40_RS06155 (WHQ40_06155) - 1170773..1171660 (-) 888 WP_011049886.1 glycosyltransferase family 2 protein -
  WHQ40_RS06160 (WHQ40_06160) - 1171653..1172861 (-) 1209 WP_011049887.1 glycosyltransferase family 2 protein -
  WHQ40_RS06165 (WHQ40_06165) - 1172939..1173910 (-) 972 WP_011049888.1 glycosyltransferase -
  WHQ40_RS06170 (WHQ40_06170) - 1173903..1174790 (-) 888 WP_011049889.1 glycosyltransferase -
  WHQ40_RS06175 (WHQ40_06175) waaV 1174844..1175653 (-) 810 WP_011049890.1 glycosyltransferase family 2 protein -
  WHQ40_RS06180 (WHQ40_06180) waaF 1175712..1176662 (+) 951 WP_011049891.1 lipopolysaccharide heptosyltransferase II Regulator
  WHQ40_RS06185 (WHQ40_06185) - 1176648..1177412 (-) 765 WP_002884483.1 glycosyltransferase family 25 protein -
  WHQ40_RS06190 (WHQ40_06190) gmhA 1177412..1177972 (-) 561 WP_338877844.1 D-sedoheptulose 7-phosphate isomerase -
  WHQ40_RS06195 (WHQ40_06195) rfaE1 1177969..1179354 (-) 1386 WP_002867399.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  WHQ40_RS06200 (WHQ40_06200) rfaD 1179347..1180300 (-) 954 WP_002867398.1 ADP-glyceromanno-heptose 6-epimerase -
  WHQ40_RS06205 (WHQ40_06205) gmhB 1180301..1180862 (-) 562 Protein_1203 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  WHQ40_RS06210 (WHQ40_06210) - 1180943..1181245 (+) 303 WP_002852762.1 cytochrome c -
  WHQ40_RS06215 (WHQ40_06215) ccoS 1181268..1181474 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36213.76 Da        Isoelectric Point: 10.2878

>NTDB_id=867281 WHQ40_RS06180 WP_011049891.1 1175712..1176662(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0091]
MKIFIHLPTWLGDAVMASPALYVIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLHIKAHLKDLKLPFKLKFQSPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLNLACMPCMQKTCPLKHHKCMKDLKPEVIVKAIQNLTNI

Nucleotide


Download         Length: 951 bp        

>NTDB_id=867281 WHQ40_RS06180 WP_011049891.1 1175712..1176662(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0091]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACGTTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTCACATAAAAGCTCACCTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAGCCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAATCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGCCCTATGCACATAAGTGCAGTTTACAAGGTAAAAACCGTGGCTATTTTTGGCCCTACAAAATTTACTCAAACCTCACC
TTGGCAAAATGAAAACGCAACATTAGTGCATTTAAATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTGAAGTGATTGTAAAAGCGATTCAAAATTTAACTAATATCTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

92.652

99.051

0.918