Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CDIFB12_RS08890 Genome accession   NZ_CP132141
Coordinates   1856075..1857028 (+) Length   317 a.a.
NCBI ID   WP_009896792.1    Uniprot ID   -
Organism   Clostridioides difficile strain B1_2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1851075..1862028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDIFB12_RS08870 (CDIFB12_17670) - 1851913..1852704 (+) 792 WP_009896788.1 HAD hydrolase family protein -
  CDIFB12_RS08875 (CDIFB12_17680) - 1852819..1853373 (-) 555 WP_003430090.1 cupin domain-containing protein -
  CDIFB12_RS08880 (CDIFB12_17690) - 1853569..1854771 (+) 1203 WP_009889545.1 DUF819 domain-containing protein -
  CDIFB12_RS08885 (CDIFB12_17700) - 1854847..1855827 (+) 981 WP_009896790.1 dipeptidase -
  CDIFB12_RS08890 (CDIFB12_17710) ceuB 1856075..1857028 (+) 954 WP_009896792.1 ABC transporter permease Machinery gene
  CDIFB12_RS08895 (CDIFB12_17720) - 1857018..1857974 (+) 957 WP_009889548.1 iron chelate uptake ABC transporter family permease subunit -
  CDIFB12_RS08900 (CDIFB12_17730) - 1857971..1858726 (+) 756 WP_009889549.1 ABC transporter ATP-binding protein -
  CDIFB12_RS08905 (CDIFB12_17740) - 1858818..1859783 (+) 966 WP_009896795.1 siderophore ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35112.57 Da        Isoelectric Point: 9.8181

>NTDB_id=867270 CDIFB12_RS08890 WP_009896792.1 1856075..1857028(+) (ceuB) [Clostridioides difficile strain B1_2]
MKKRYLVIGIIILSYFSLFIGAEDINIMHIFAKNQHKLMIFIMSRIPRLISILIAGVGMSIAGLIMQQISKNKFVSPTTG
ATIDAAQFGIVICMLLVPTASIFTKTIIAFVFSLVGTFTFMKIIGKLQFKNIIFVPLVGIMFGNIIGSMTDFIAYKYDLS
QNVSSWMQGDFSMILKGNYEILYITIPLIILAYIYANKFTVVGMGMDFATNLGLSYKRIVNIGLIIVALVTVCVVVTAGN
IPFIGLIVPNIVSLYMGDNIRANIWYTGLLGAIFVLICDIFGRIIIYPYEISIGLTVGVIGSILFLYLILRRNVNEA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=867270 CDIFB12_RS08890 WP_009896792.1 1856075..1857028(+) (ceuB) [Clostridioides difficile strain B1_2]
ATGAAGAAAAGGTATTTAGTCATAGGAATAATAATTTTGTCTTATTTTTCTTTATTTATAGGAGCTGAAGATATAAATAT
AATGCATATATTTGCCAAAAATCAGCATAAACTTATGATATTTATCATGAGTAGAATACCAAGATTAATAAGTATATTGA
TTGCTGGTGTAGGAATGAGCATAGCAGGTCTTATAATGCAACAGATAAGTAAGAATAAATTTGTATCACCTACAACAGGT
GCTACAATAGATGCAGCACAATTTGGGATAGTAATATGTATGCTTTTAGTACCAACTGCCTCTATTTTTACAAAGACAAT
AATAGCATTTGTATTTTCTCTTGTAGGGACTTTTACGTTTATGAAAATAATAGGGAAGTTACAATTTAAAAATATAATCT
TTGTACCATTAGTAGGTATAATGTTTGGAAATATAATAGGTTCTATGACGGATTTTATCGCGTATAAATACGATTTGAGT
CAAAATGTTAGTTCTTGGATGCAAGGTGACTTTTCTATGATACTTAAAGGAAATTATGAGATATTATATATCACAATACC
CCTTATAATATTAGCATATATTTATGCAAATAAATTTACTGTTGTTGGTATGGGTATGGATTTTGCGACAAACTTAGGTC
TTAGTTACAAAAGAATTGTCAATATAGGTCTGATAATAGTAGCACTTGTTACAGTATGTGTAGTCGTTACAGCTGGTAAT
ATCCCTTTTATAGGTCTAATAGTTCCAAATATCGTATCCTTGTATATGGGTGATAATATAAGAGCAAACATATGGTATAC
TGGTTTACTTGGAGCGATATTTGTACTTATATGTGATATTTTTGGAAGAATTATTATTTATCCATATGAAATATCTATAG
GGCTTACAGTTGGAGTTATAGGAAGTATACTATTCCTTTATTTAATATTAAGGAGGAATGTAAATGAAGCTTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.515

93.691

0.483