Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDIFB12_RS06890 | Genome accession | NZ_CP132141 |
| Coordinates | 1439773..1440819 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain B1_2 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1411892..1479374 | 1439773..1440819 | within | 0 |
Gene organization within MGE regions
Location: 1411892..1479374
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIFB12_RS06775 (CDIFB12_13510) | rimP | 1416134..1416595 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| CDIFB12_RS06780 (CDIFB12_13520) | nusA | 1416625..1417779 (+) | 1155 | WP_207011480.1 | transcription termination factor NusA | - |
| CDIFB12_RS06785 (CDIFB12_13530) | rnpM | 1417786..1418067 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| CDIFB12_RS06790 (CDIFB12_13540) | - | 1418057..1418368 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CDIFB12_RS06795 (CDIFB12_13550) | infB | 1418390..1420330 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| CDIFB12_RS06800 (CDIFB12_13560) | rbfA | 1420373..1420753 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| CDIFB12_RS06805 (CDIFB12_13570) | - | 1420734..1421411 (+) | 678 | Protein_1252 | DHH family phosphoesterase | - |
| CDIFB12_RS06810 (CDIFB12_13580) | tnpB | 1422058..1423176 (+) | 1119 | WP_032548186.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| CDIFB12_RS06815 (CDIFB12_13590) | - | 1423294..1423599 (+) | 306 | Protein_1254 | DHH family phosphoesterase | - |
| CDIFB12_RS06820 (CDIFB12_13600) | truB | 1423612..1424517 (+) | 906 | WP_009896221.1 | tRNA pseudouridine(55) synthase TruB | - |
| CDIFB12_RS06825 (CDIFB12_13610) | - | 1424648..1425577 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CDIFB12_RS06830 (CDIFB12_13620) | rpsO | 1425681..1425938 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CDIFB12_RS06835 (CDIFB12_13630) | - | 1426178..1427023 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| CDIFB12_RS06840 (CDIFB12_13640) | pnp | 1427148..1429259 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| CDIFB12_RS06845 (CDIFB12_13650) | - | 1429525..1430268 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| CDIFB12_RS06850 (CDIFB12_13660) | - | 1430426..1431673 (+) | 1248 | WP_074124121.1 | M16 family metallopeptidase | - |
| CDIFB12_RS06855 (CDIFB12_13670) | - | 1431708..1431953 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| CDIFB12_RS06860 (CDIFB12_13680) | dapG | 1431963..1433186 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| CDIFB12_RS06865 (CDIFB12_13690) | - | 1433299..1434033 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| CDIFB12_RS06870 (CDIFB12_13700) | - | 1434156..1436567 (+) | 2412 | WP_009896226.1 | FtsK/SpoIIIE family DNA translocase | - |
| CDIFB12_RS06875 (CDIFB12_13710) | mnmH | 1436570..1437628 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDIFB12_RS06880 (CDIFB12_13720) | rimO | 1437622..1438956 (+) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDIFB12_RS06885 (CDIFB12_13730) | pgsA | 1438943..1439485 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDIFB12_RS06890 (CDIFB12_13740) | recA | 1439773..1440819 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| CDIFB12_RS06895 (CDIFB12_13750) | rny | 1440995..1442536 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDIFB12_RS06900 (CDIFB12_13760) | - | 1443170..1444951 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| CDIFB12_RS06905 (CDIFB12_13770) | lepB | 1445033..1445563 (-) | 531 | WP_009896231.1 | signal peptidase I | - |
| CDIFB12_RS06910 (CDIFB12_13780) | - | 1445603..1446427 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| CDIFB12_RS06915 (CDIFB12_13790) | - | 1446684..1447592 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| CDIFB12_RS06920 (CDIFB12_13800) | purB | 1447736..1449181 (+) | 1446 | WP_009896234.1 | adenylosuccinate lyase | - |
| CDIFB12_RS06925 (CDIFB12_13810) | - | 1449493..1449945 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIFB12_RS06930 (CDIFB12_13820) | - | 1450280..1451476 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDIFB12_RS06935 (CDIFB12_13830) | galT | 1451861..1452811 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| CDIFB12_RS06940 (CDIFB12_13840) | - | 1452972..1453724 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| CDIFB12_RS06945 (CDIFB12_13850) | - | 1453816..1454592 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| CDIFB12_RS06950 (CDIFB12_13860) | - | 1454907..1456805 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| CDIFB12_RS06955 (CDIFB12_13870) | - | 1456933..1458054 (-) | 1122 | WP_003438374.1 | MGDG synthase family glycosyltransferase | - |
| CDIFB12_RS06960 (CDIFB12_13880) | - | 1458253..1458585 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CDIFB12_RS06965 (CDIFB12_13890) | - | 1458572..1459654 (+) | 1083 | WP_011861182.1 | DUF1700 domain-containing protein | - |
| CDIFB12_RS06970 (CDIFB12_13900) | - | 1459647..1460717 (+) | 1071 | WP_009896243.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDIFB12_RS06975 (CDIFB12_13910) | - | 1460819..1461355 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| CDIFB12_RS06980 (CDIFB12_13920) | - | 1461471..1462178 (+) | 708 | WP_009896245.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDIFB12_RS06985 (CDIFB12_13930) | - | 1462180..1462896 (+) | 717 | WP_009896246.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDIFB12_RS06990 (CDIFB12_13940) | - | 1462898..1463656 (+) | 759 | WP_009896249.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDIFB12_RS06995 (CDIFB12_13950) | - | 1463791..1465179 (+) | 1389 | WP_009896251.1 | two-component system sensor histidine kinase | - |
| CDIFB12_RS07000 (CDIFB12_13960) | - | 1465255..1466076 (-) | 822 | WP_009896253.1 | pyridoxamine kinase | - |
| CDIFB12_RS07005 (CDIFB12_13970) | - | 1466327..1467481 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| CDIFB12_RS07010 (CDIFB12_13980) | - | 1467664..1467864 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDIFB12_RS07015 (CDIFB12_13990) | - | 1468285..1468713 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDIFB12_RS07020 (CDIFB12_14000) | - | 1468856..1469611 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CDIFB12_RS07025 (CDIFB12_14020) | - | 1470312..1470818 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIFB12_RS07030 (CDIFB12_14030) | - | 1470900..1471220 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| CDIFB12_RS07035 (CDIFB12_14040) | - | 1471389..1471586 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| CDIFB12_RS07040 (CDIFB12_14050) | - | 1471691..1472131 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| CDIFB12_RS07045 (CDIFB12_14060) | - | 1472380..1472823 (+) | 444 | WP_009896258.1 | phage tail terminator family protein | - |
| CDIFB12_RS07050 (CDIFB12_14070) | - | 1472828..1473892 (+) | 1065 | WP_009896260.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CDIFB12_RS07055 (CDIFB12_14080) | - | 1473906..1474334 (+) | 429 | WP_009896262.1 | phage tail tube protein | - |
| CDIFB12_RS07060 (CDIFB12_14090) | - | 1474448..1474894 (+) | 447 | WP_009889139.1 | phage tail assembly chaperone | - |
| CDIFB12_RS07065 | - | 1474921..1475088 (+) | 168 | WP_009896264.1 | hypothetical protein | - |
| CDIFB12_RS07070 (CDIFB12_14100) | - | 1475088..1477418 (+) | 2331 | WP_009896266.1 | hypothetical protein | - |
| CDIFB12_RS07075 (CDIFB12_14110) | - | 1477418..1477840 (+) | 423 | WP_009896267.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=867269 CDIFB12_RS06890 WP_003428218.1 1439773..1440819(+) (recA) [Clostridioides difficile strain B1_2]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=867269 CDIFB12_RS06890 WP_003428218.1 1439773..1440819(+) (recA) [Clostridioides difficile strain B1_2]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.