Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EUMA32_RS13380 Genome accession   NZ_CP132138
Coordinates   2778152..2779513 (-) Length   453 a.a.
NCBI ID   WP_074616610.1    Uniprot ID   -
Organism   Eubacterium maltosivorans strain DSM 20517     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2773152..2784513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUMA32_RS13345 (EUMA32_26640) scfA 2773300..2773440 (-) 141 WP_074616613.1 six-cysteine ranthipeptide SCIFF -
  EUMA32_RS13350 (EUMA32_26650) yajC 2773467..2773913 (-) 447 WP_058695475.1 preprotein translocase subunit YajC -
  EUMA32_RS13355 (EUMA32_26660) tgt 2773933..2775042 (-) 1110 WP_058695476.1 tRNA guanosine(34) transglycosylase Tgt -
  EUMA32_RS13360 (EUMA32_26670) queA 2775055..2776089 (-) 1035 WP_199678127.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  EUMA32_RS13365 (EUMA32_26680) ruvB 2776092..2777129 (-) 1038 WP_074616612.1 Holliday junction branch migration DNA helicase RuvB -
  EUMA32_RS13370 (EUMA32_26690) ruvA 2777139..2777750 (-) 612 WP_074616611.1 Holliday junction branch migration protein RuvA -
  EUMA32_RS13380 (EUMA32_26700) radA 2778152..2779513 (-) 1362 WP_074616610.1 DNA repair protein RadA Machinery gene
  EUMA32_RS13385 (EUMA32_26710) - 2779524..2780009 (-) 486 WP_058695481.1 VanZ family protein -
  EUMA32_RS13390 (EUMA32_26720) - 2780078..2781127 (-) 1050 WP_074616609.1 PTS transporter subunit IIC -
  EUMA32_RS13395 (EUMA32_26740) - 2781348..2781989 (-) 642 WP_074616608.1 acetolactate decarboxylase -
  EUMA32_RS13400 (EUMA32_26750) - 2781999..2782919 (-) 921 WP_083337035.1 GTP-binding protein -
  EUMA32_RS13405 (EUMA32_26760) - 2782978..2784327 (-) 1350 WP_058695485.1 uroporphyrinogen decarboxylase family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50441.72 Da        Isoelectric Point: 8.1362

>NTDB_id=867241 EUMA32_RS13380 WP_074616610.1 2778152..2779513(-) (radA) [Eubacterium maltosivorans strain DSM 20517]
MAKIKKKFVCQNCGYSTPKWMGRCTECGEWNSFVEELDMPTEQGKKNTLERAVYTKPKRIEEIIPQKEDRFKTKNKELDR
VLGGGIVPGGVILLGGDPGIGKSTILLQTTENLGSQGLKILYISGEESEQQLKMRAVRMNVKSQNIFFLSEINVPYIVDT
ILNEKPDLVIIDSIQTMYSPTITSAPGSVSQIRENANALMQIAKKDNISMILVGHVTKEGNIAGPRVLEHMVDTVLYFEG
EKYHTYRILRGVKNRFGSTNEIGIFEMAQDGLHEVANPSEMMLSSRPKNTCGSVVVPCMEGTRPLLIELQGLVSQTSFGN
PRRMATGMDYNRMVLLLAIMEKRLGLQLQNLDAYINVVGGMKIDEPALDLAVVSVLYSSFRNFEIPEDMMIIGEVGLTGE
VRNIQHIEKRLKEGAKLGFKRCIMPKGNARGLENTGLELLPVDNISKALNILK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=867241 EUMA32_RS13380 WP_074616610.1 2778152..2779513(-) (radA) [Eubacterium maltosivorans strain DSM 20517]
ATGGCGAAAATAAAAAAGAAGTTTGTATGCCAGAACTGCGGGTACAGCACCCCTAAATGGATGGGGCGCTGTACAGAATG
CGGCGAATGGAATTCCTTTGTGGAGGAGCTGGACATGCCCACCGAGCAGGGAAAGAAAAATACCCTTGAACGGGCGGTAT
ACACAAAACCGAAGCGTATTGAGGAAATCATTCCTCAGAAAGAGGATCGTTTTAAAACGAAAAACAAGGAGCTCGACCGT
GTCCTCGGCGGTGGTATCGTGCCCGGAGGCGTTATCCTCCTGGGCGGTGACCCTGGAATTGGAAAGTCGACGATCCTGCT
GCAGACGACGGAGAATCTTGGAAGCCAGGGGCTTAAAATCTTGTATATTTCGGGTGAAGAATCTGAGCAGCAGCTCAAAA
TGCGGGCAGTCCGGATGAATGTAAAATCCCAGAATATCTTTTTTCTGTCTGAGATTAACGTACCCTATATCGTAGATACT
ATTTTGAATGAGAAACCCGATCTTGTCATTATTGACTCGATCCAGACAATGTACAGTCCTACGATTACCTCGGCTCCCGG
AAGCGTCAGCCAGATAAGGGAGAACGCCAACGCGTTGATGCAGATTGCCAAAAAAGATAATATTTCGATGATTCTGGTCG
GGCATGTGACCAAGGAAGGCAATATTGCTGGTCCACGTGTGTTAGAACACATGGTTGATACGGTTTTGTATTTTGAGGGT
GAAAAGTATCATACCTACCGGATACTCAGAGGGGTCAAAAACCGTTTTGGCTCAACCAACGAGATCGGTATTTTCGAGAT
GGCGCAGGATGGCCTGCACGAGGTGGCAAATCCCTCTGAAATGATGTTGTCAAGCCGGCCGAAAAATACCTGCGGCTCAG
TGGTAGTGCCCTGCATGGAGGGCACGCGTCCGCTTTTAATCGAGCTTCAGGGGCTCGTATCTCAGACAAGCTTCGGTAAC
CCAAGGCGTATGGCCACCGGAATGGACTATAACCGTATGGTGCTGCTCCTGGCTATTATGGAAAAACGGCTGGGATTACA
GCTTCAGAATCTCGATGCTTATATCAATGTGGTCGGGGGTATGAAAATAGACGAACCGGCTCTCGATCTGGCCGTTGTGT
CTGTGCTGTACTCAAGCTTCAGAAATTTTGAGATTCCAGAGGATATGATGATTATCGGCGAGGTTGGCCTGACTGGTGAG
GTCAGAAATATACAGCACATTGAAAAGCGTCTTAAAGAGGGCGCAAAGCTTGGTTTCAAGCGCTGCATCATGCCAAAGGG
CAATGCCCGGGGCCTGGAGAATACAGGGCTTGAGCTGCTGCCGGTAGACAACATCTCCAAGGCTTTAAATATATTGAAGT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(62-220)

Subunit ChlI of Mg-chelatase (ChlI)

(355-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

55.752

99.779

0.556
  radA Streptococcus pneumoniae Rx1

52.546

95.364

0.501
  radA Streptococcus pneumoniae D39

52.546

95.364

0.501
  radA Streptococcus pneumoniae R6

52.546

95.364

0.501
  radA Streptococcus pneumoniae TIGR4

52.546

95.364

0.501
  radA Streptococcus mitis SK321

52.546

95.364

0.501
  radA Streptococcus mitis NCTC 12261

52.546

95.364

0.501