Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   EUMA32_RS07740 Genome accession   NZ_CP132138
Coordinates   1666563..1667258 (+) Length   231 a.a.
NCBI ID   WP_074616797.1    Uniprot ID   -
Organism   Eubacterium maltosivorans strain DSM 20517     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1661563..1672258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUMA32_RS07720 (EUMA32_15430) - 1662407..1663891 (+) 1485 WP_058694413.1 glycerol kinase GlpK -
  EUMA32_RS07725 (EUMA32_15440) - 1664006..1664740 (-) 735 WP_074616795.1 ABC transporter permease -
  EUMA32_RS07730 (EUMA32_15450) - 1664753..1665502 (-) 750 WP_074616796.1 ABC transporter permease -
  EUMA32_RS07735 (EUMA32_15460) - 1665502..1666410 (-) 909 WP_058694416.1 ABC transporter ATP-binding protein -
  EUMA32_RS07740 (EUMA32_15470) scnR 1666563..1667258 (+) 696 WP_074616797.1 response regulator transcription factor Regulator
  EUMA32_RS07745 (EUMA32_15480) - 1667271..1668719 (+) 1449 WP_074616798.1 sensor histidine kinase KdpD -
  EUMA32_RS07750 (EUMA32_15490) - 1668765..1669163 (-) 399 WP_058694419.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EUMA32_RS07760 (EUMA32_15510) - 1669530..1670579 (+) 1050 WP_074616799.1 response regulator -
  EUMA32_RS07765 (EUMA32_15520) - 1670789..1672207 (+) 1419 WP_074616800.1 C69 family dipeptidase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 25684.80 Da        Isoelectric Point: 5.1981

>NTDB_id=867232 EUMA32_RS07740 WP_074616797.1 1666563..1667258(+) (scnR) [Eubacterium maltosivorans strain DSM 20517]
MDYIKDKGILLVDDEPELLKLVHKILKNEGFAKVYTASSVAEGMTVFLEKAPDMAVLDVMLPDGEGFELLKFIRASSDIP
VLFLSARGNAEDRFTGFGLGADDYIIKPFLPQELVFRITAILKRAYKNEAPTFTLADATIDLDRAEIIRGEEHLPLTAKE
HAILQKLYENAGKIVTIGSLCDYVWEGDSYGYEKPLMAHIGRIREKIEADPSHPKALVTAKGLGYKLLVSK

Nucleotide


Download         Length: 696 bp        

>NTDB_id=867232 EUMA32_RS07740 WP_074616797.1 1666563..1667258(+) (scnR) [Eubacterium maltosivorans strain DSM 20517]
ATGGATTACATTAAAGATAAGGGCATTCTTCTGGTCGACGATGAGCCAGAGCTTTTAAAACTGGTGCATAAGATACTCAA
AAATGAAGGCTTTGCGAAGGTTTATACAGCATCGAGCGTGGCCGAGGGTATGACTGTTTTTCTGGAAAAAGCTCCAGATA
TGGCAGTTCTTGATGTGATGCTGCCAGATGGTGAGGGTTTTGAGCTGCTTAAATTTATCCGGGCTTCTTCGGATATCCCG
GTGCTCTTTTTATCAGCCCGGGGCAATGCCGAGGACCGGTTCACCGGCTTTGGTCTGGGAGCGGATGATTATATTATCAA
GCCCTTTCTGCCCCAGGAGCTTGTGTTCAGGATCACAGCTATTTTAAAACGTGCCTACAAAAACGAAGCGCCGACCTTTA
CCCTGGCCGACGCCACAATCGATCTGGATCGCGCTGAGATTATCAGGGGAGAGGAGCATCTGCCTCTTACCGCCAAAGAG
CATGCTATCCTCCAAAAACTTTATGAAAATGCAGGAAAAATTGTGACGATTGGCTCCCTCTGCGACTATGTGTGGGAGGG
CGATAGCTATGGTTATGAAAAACCGCTTATGGCGCATATAGGCCGTATCCGGGAAAAAATCGAGGCAGATCCCAGCCATC
CAAAAGCCCTTGTGACGGCCAAGGGGCTGGGTTATAAGCTGTTAGTGAGCAAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

49.565

99.567

0.494