Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EUCAG14_RS19545 Genome accession   NZ_CP132137
Coordinates   4139695..4141530 (+) Length   611 a.a.
NCBI ID   WP_013382600.1    Uniprot ID   A0AB74F4E3
Organism   Eubacterium callanderi strain DSM 107592     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4134695..4146530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUCAG14_RS19525 (EUCAG14_39320) - 4136697..4136951 (-) 255 WP_148430193.1 hypothetical protein -
  EUCAG14_RS19530 (EUCAG14_39330) - 4137225..4137707 (+) 483 WP_148430191.1 MarR family winged helix-turn-helix transcriptional regulator -
  EUCAG14_RS19535 (EUCAG14_39340) - 4137700..4137873 (+) 174 WP_013382598.1 cysteine-rich KTR domain-containing protein -
  EUCAG14_RS19540 (EUCAG14_39350) rcrP 4137939..4139702 (+) 1764 WP_148430189.1 ABC transporter ATP-binding protein Regulator
  EUCAG14_RS19545 (EUCAG14_39360) rcrQ 4139695..4141530 (+) 1836 WP_013382600.1 ABC transporter ATP-binding protein Regulator
  EUCAG14_RS19550 (EUCAG14_39370) - 4141718..4143379 (-) 1662 WP_148430187.1 FAD-dependent oxidoreductase -
  EUCAG14_RS19555 (EUCAG14_39380) ahpC 4143396..4143962 (-) 567 WP_013382603.1 alkyl hydroperoxide reductase subunit C -
  EUCAG14_RS19560 (EUCAG14_39390) - 4144140..4144982 (-) 843 WP_406601443.1 IS3 family transposase -
  EUCAG14_RS21055 (EUCAG14_39400) - 4144979..4145332 (-) 354 WP_406601393.1 transposase -
  EUCAG14_RS19565 (EUCAG14_39410) - 4145443..4146411 (-) 969 WP_148430692.1 DMT family transporter -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 67734.13 Da        Isoelectric Point: 9.2596

>NTDB_id=867227 EUCAG14_RS19545 WP_013382600.1 4139695..4141530(+) (rcrQ) [Eubacterium callanderi strain DSM 107592]
MNNAQYNKNQKAENTDLSDFSGMSGSVAKAKDTKKTIKMLLTYSKKYLPGIIIAVIAAVAGTIIALVGPGKLKVLTNLIT
EGIPTIIDMPGIVKIGILLIVLYLTSALLNTLQGWIMATVTQKISQKMRIDISRKINRLPMWFYHKNTTGDILSRITNDV
DSLGQNLNNSLTTLVTSITMLTGSLIMMFITNWTMTLAAIASVVLGFITMMIIMSKSQKHFDNQQKYLGLINGHIEETYT
GHLIVKAYNGEQQMFEPFKGLNKKLNKSTYMAQFLSGLMMPIMTFVDNISYVAVIVVGASLVISGQISFGVIVAFLVYVR
YFTQPLTQIAQLAQGLQMAVASGERVFEFLDAEEMADEKNKKAPLQNVKGHVEFKNVKFSYEGTDKMVINNFSAIAKPGQ
KIAIVGPTGSGKTTLVNLLMRFNEINSGDILIDGVPIRQMTRAQVHSLFCMVLQDTWLFEGTIRENIVYNKQNVSDEDLK
KACALVGLHHFIRTLPNGYDTVLNDKVNLSAGQRQQITIARTMIDNAPMLILDEATSSIDTRTEVMIQNAMDKLMEGRTS
FVIAHRLSTIKNADIILVLKDGDIIESGSHTELIEKNGFYAELYNSQFEVA

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=867227 EUCAG14_RS19545 WP_013382600.1 4139695..4141530(+) (rcrQ) [Eubacterium callanderi strain DSM 107592]
ATGAATAATGCGCAATACAATAAAAACCAGAAGGCCGAAAACACGGACCTCTCCGATTTTTCCGGCATGAGCGGATCTGT
TGCAAAAGCAAAAGATACGAAAAAAACAATAAAAATGCTGTTGACTTATTCAAAAAAATACCTGCCGGGTATCATCATTG
CAGTTATAGCCGCTGTTGCAGGGACTATCATTGCCCTGGTAGGCCCTGGCAAACTCAAAGTTTTAACCAATCTGATTACT
GAAGGTATCCCGACCATCATCGATATGCCTGGCATTGTTAAAATTGGGATTCTTTTAATTGTATTGTACTTAACGAGTGC
GCTCTTAAATACCTTACAGGGATGGATCATGGCCACCGTCACCCAGAAGATATCTCAAAAAATGCGAATTGATATCAGTA
GAAAAATCAACCGTCTGCCCATGTGGTTTTATCATAAAAACACCACCGGCGACATTCTTTCCCGCATCACAAACGATGTC
GATTCACTGGGGCAGAATTTAAATAACAGTTTGACCACCCTTGTAACGTCCATCACCATGCTCACGGGCTCTCTCATCAT
GATGTTCATCACAAACTGGACCATGACTCTTGCGGCAATTGCCTCTGTCGTCCTTGGATTTATCACTATGATGATCATTA
TGAGTAAATCGCAAAAACATTTTGACAACCAGCAAAAATATTTGGGGCTTATTAACGGCCATATCGAAGAAACCTACACG
GGCCACCTTATTGTAAAGGCCTATAACGGCGAGCAGCAGATGTTTGAACCCTTCAAAGGCCTAAACAAAAAACTAAACAA
AAGTACCTATATGGCCCAATTTCTTTCTGGCCTGATGATGCCTATCATGACCTTTGTAGACAACATCAGTTATGTTGCTG
TCATCGTTGTCGGTGCGTCTTTAGTGATAAGCGGACAAATCTCTTTTGGCGTGATTGTCGCGTTCTTGGTCTATGTGCGC
TATTTCACCCAGCCCCTCACACAAATCGCCCAATTGGCTCAAGGCTTACAGATGGCGGTTGCCTCTGGTGAACGTGTCTT
TGAATTCTTGGATGCAGAGGAGATGGCTGATGAAAAAAATAAAAAAGCGCCACTGCAGAATGTAAAGGGCCATGTCGAAT
TTAAAAATGTCAAATTCAGCTACGAAGGGACCGATAAAATGGTTATCAATAACTTTTCCGCCATCGCCAAACCCGGACAA
AAAATTGCCATTGTCGGTCCAACCGGATCAGGAAAAACAACCCTTGTCAATTTACTCATGCGTTTTAATGAGATCAACAG
CGGTGATATTTTAATTGACGGCGTTCCAATCCGGCAAATGACAAGAGCTCAGGTGCATTCTCTTTTCTGTATGGTCTTGC
AAGACACCTGGCTTTTTGAAGGCACCATTCGGGAAAACATTGTTTACAACAAGCAAAACGTATCCGACGAAGATCTCAAA
AAGGCCTGTGCGTTGGTGGGCTTGCACCACTTCATCCGTACTCTTCCCAATGGGTATGATACAGTCCTGAACGATAAGGT
TAATCTTTCAGCGGGCCAGCGGCAGCAGATAACCATTGCCCGCACCATGATTGATAACGCACCCATGCTCATTTTAGATG
AAGCGACAAGCTCCATTGACACCCGGACAGAAGTGATGATTCAAAATGCGATGGACAAGCTTATGGAAGGCCGCACCTCC
TTTGTCATCGCCCATCGCCTTTCCACCATCAAAAACGCAGACATCATCCTAGTGCTCAAAGACGGTGATATTATTGAAAG
CGGCAGTCATACCGAATTAATTGAAAAAAACGGTTTTTACGCCGAGCTTTACAACAGCCAGTTTGAAGTCGCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(51-326)

ABC transporter (ABC_tran)

(390-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.759

94.926

0.501