Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   EUCAG14_RS11415 Genome accession   NZ_CP132137
Coordinates   2402688..2403383 (-) Length   231 a.a.
NCBI ID   WP_090412529.1    Uniprot ID   -
Organism   Eubacterium callanderi strain DSM 107592     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2397688..2408383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUCAG14_RS11390 (EUCAG14_22850) - 2397730..2399148 (-) 1419 WP_148430619.1 C69 family dipeptidase -
  EUCAG14_RS11395 (EUCAG14_22860) - 2399366..2400415 (-) 1050 WP_148430617.1 response regulator -
  EUCAG14_RS11405 (EUCAG14_22880) - 2400782..2401180 (+) 399 WP_148430615.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EUCAG14_RS11410 (EUCAG14_22890) - 2401236..2402675 (-) 1440 WP_148430613.1 sensor histidine kinase KdpD -
  EUCAG14_RS11415 (EUCAG14_22900) scnR 2402688..2403383 (-) 696 WP_090412529.1 response regulator transcription factor Regulator
  EUCAG14_RS11420 (EUCAG14_22910) - 2403538..2404446 (+) 909 WP_148430611.1 ATP-binding cassette domain-containing protein -
  EUCAG14_RS11425 (EUCAG14_22920) - 2404446..2405195 (+) 750 WP_148430609.1 ABC transporter permease -
  EUCAG14_RS11430 (EUCAG14_22930) - 2405208..2405942 (+) 735 WP_090412531.1 ABC transporter permease -
  EUCAG14_RS11435 (EUCAG14_22940) - 2406178..2407662 (-) 1485 WP_148430607.1 glycerol kinase GlpK -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 25733.93 Da        Isoelectric Point: 4.8198

>NTDB_id=867219 EUCAG14_RS11415 WP_090412529.1 2402688..2403383(-) (scnR) [Eubacterium callanderi strain DSM 107592]
MDYIKDKGILLVDDEPELLKLVHKILENEGFAKVYTASSMAEGMTVFLEKAPDMAVLDVMLPDGEGFELLKFIRGSSDIP
VLFLSARGNAEDRFTGFGLGADDYIIKPFLPQELVFRITAILKRAYKNEAPTFILADATVDLDRAEIIRGEEILPLTAKE
HAILQKLYENAGKIVTIGALCDFVWEGDSYGYEKPLMAHIGRIREKIETDPSHPKSLITVKGLGYKLLVSK

Nucleotide


Download         Length: 696 bp        

>NTDB_id=867219 EUCAG14_RS11415 WP_090412529.1 2402688..2403383(-) (scnR) [Eubacterium callanderi strain DSM 107592]
ATGGATTACATTAAAGATAAAGGCATTCTTCTGGTCGACGATGAACCAGAGCTTTTAAAGCTGGTGCATAAGATACTCGA
AAATGAAGGATTTGCGAAGGTTTATACAGCGTCGAGCATGGCCGAGGGAATGACCGTTTTTCTGGAAAAAGCTCCGGATA
TGGCCGTGCTTGATGTGATGCTGCCAGATGGTGAAGGTTTTGAGCTGCTAAAATTCATCCGTGGATCCTCGGATATCCCG
GTGCTTTTTTTATCAGCCAGAGGCAATGCCGAGGACCGGTTCACCGGCTTTGGTCTGGGAGCGGATGATTATATTATCAA
GCCCTTTCTGCCCCAGGAGCTTGTGTTCAGGATCACAGCTATTTTAAAACGTGCCTACAAAAACGAAGCGCCGACCTTTA
TCCTGGCTGACGCCACAGTAGATCTGGACCGCGCTGAGATTATCAGGGGAGAGGAGATTCTTCCCCTTACGGCCAAAGAG
CATGCCATTCTTCAAAAGCTCTATGAAAATGCAGGGAAAATTGTAACCATTGGCGCCCTCTGTGATTTTGTATGGGAGGG
CGACAGCTATGGCTATGAAAAACCGCTCATGGCTCATATCGGTCGTATTCGCGAAAAAATCGAGACTGACCCCAGCCATC
CAAAGTCTCTTATTACAGTCAAAGGGCTTGGCTATAAGCTGCTCGTAAGTAAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.435

99.567

0.502