Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   WHP84_RS01055 Genome accession   NZ_CP148181
Coordinates   203745..204128 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain Z1323CCJ0101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 198745..209128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP84_RS01035 (WHP84_01035) - 198824..200758 (-) 1935 WP_002852122.1 ribonuclease R family protein -
  WHP84_RS01040 (WHP84_01040) ilvC 200877..201899 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  WHP84_RS01045 (WHP84_01045) - 201903..202985 (+) 1083 WP_002852295.1 divergent polysaccharide deacetylase family protein -
  WHP84_RS01050 (WHP84_01050) dprA 202975..203748 (+) 774 WP_002852253.1 DNA-processing protein DprA Machinery gene
  WHP84_RS01055 (WHP84_01055) dprB 203745..204128 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  WHP84_RS01060 (WHP84_01060) - 204157..204996 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHP84_RS01065 (WHP84_01065) msrA 205173..205670 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHP84_RS01070 (WHP84_01070) ppa 205712..206230 (-) 519 WP_002852138.1 inorganic diphosphatase -
  WHP84_RS01075 (WHP84_01075) adk 206240..206818 (-) 579 WP_002852182.1 adenylate kinase -
  WHP84_RS01080 (WHP84_01080) aspS 206815..208566 (-) 1752 WP_002852289.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=867168 WHP84_RS01055 WP_002852281.1 203745..204128(+) (dprB) [Campylobacter jejuni strain Z1323CCJ0101]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=867168 WHP84_RS01055 WP_002852281.1 203745..204128(+) (dprB) [Campylobacter jejuni strain Z1323CCJ0101]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCCTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449