Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   Q7W68_RS09670 Genome accession   NZ_CP132065
Coordinates   1881153..1881440 (+) Length   95 a.a.
NCBI ID   WP_002012401.1    Uniprot ID   A0A366G1Y4
Organism   Bacillus mycoides strain PAMC 29538     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1876153..1886440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W68_RS09650 - 1877336..1877536 (+) 201 WP_002141377.1 DUF4083 domain-containing protein -
  Q7W68_RS09655 - 1877564..1878025 (+) 462 WP_002141378.1 NUDIX hydrolase -
  Q7W68_RS09660 nadE 1878070..1878888 (-) 819 WP_002031433.1 ammonia-dependent NAD(+) synthetase -
  Q7W68_RS09665 - 1879153..1881033 (+) 1881 WP_305927384.1 FtsX-like permease family protein -
  Q7W68_RS09670 abrB 1881153..1881440 (+) 288 WP_002012401.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  Q7W68_RS09675 - 1881775..1882725 (+) 951 WP_016102180.1 serine protease -
  Q7W68_RS09680 - 1882766..1883074 (-) 309 WP_016102179.1 helix-turn-helix transcriptional regulator -
  Q7W68_RS09685 - 1883182..1884117 (+) 936 WP_305927385.1 aldo/keto reductase -
  Q7W68_RS32365 - 1884137..1884341 (+) 205 Protein_1825 hypothetical protein -
  Q7W68_RS09690 - 1884372..1884596 (-) 225 WP_002141385.1 hypothetical protein -
  Q7W68_RS09695 - 1884681..1885028 (-) 348 WP_000426320.1 DUF4257 domain-containing protein -
  Q7W68_RS09700 - 1885225..1885764 (+) 540 WP_088039244.1 DinB family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10647.42 Da        Isoelectric Point: 6.9795

>NTDB_id=867144 Q7W68_RS09670 WP_002012401.1 1881153..1881440(+) (abrB) [Bacillus mycoides strain PAMC 29538]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIEGAK
HVIKEIEQFLNKSKI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=867144 Q7W68_RS09670 WP_002012401.1 1881153..1881440(+) (abrB) [Bacillus mycoides strain PAMC 29538]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGGATAGTTATTCCTAAAGAATTACGAGATGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAGACCAAAATATTTCATTAGCAAATGGAAACATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAACAAGAGTAAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366G1Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.383

98.947

0.558