Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   Q7W68_RS07700 Genome accession   NZ_CP132065
Coordinates   1492833..1493435 (-) Length   200 a.a.
NCBI ID   WP_002030800.1    Uniprot ID   A0A366GKC2
Organism   Bacillus mycoides strain PAMC 29538     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1487833..1498435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W68_RS07680 dnaD 1488124..1488831 (+) 708 WP_000728546.1 DNA replication protein DnaD -
  Q7W68_RS07685 nth 1488847..1489494 (+) 648 WP_002030794.1 endonuclease III -
  Q7W68_RS07690 - 1489498..1490016 (+) 519 WP_305927267.1 YpoC family protein -
  Q7W68_RS07695 - 1490043..1492766 (-) 2724 WP_305927268.1 penicillin-binding protein 1A -
  Q7W68_RS07700 recU 1492833..1493435 (-) 603 WP_002030800.1 Holliday junction resolvase RecU Machinery gene
  Q7W68_RS07705 - 1493539..1494564 (+) 1026 WP_305927269.1 DUF2515 domain-containing protein -
  Q7W68_RS32345 - 1494907..1495053 (-) 147 WP_306302660.1 phage portal protein -
  Q7W68_RS07710 - 1495172..1495414 (+) 243 WP_305927270.1 hypothetical protein -
  Q7W68_RS07715 - 1495430..1495774 (+) 345 WP_002011864.1 YppE family protein -
  Q7W68_RS07720 - 1495800..1495991 (-) 192 WP_002030817.1 YppF family protein -
  Q7W68_RS07725 - 1496169..1496831 (+) 663 WP_305927271.1 YppG family protein -
  Q7W68_RS07730 - 1496988..1497413 (+) 426 WP_002011871.1 CotD family spore coat protein -
  Q7W68_RS07735 - 1497470..1498024 (+) 555 WP_002011870.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23347.59 Da        Isoelectric Point: 9.5601

>NTDB_id=867143 Q7W68_RS07700 WP_002030800.1 1492833..1493435(-) (recU) [Bacillus mycoides strain PAMC 29538]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNDTNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=867143 Q7W68_RS07700 WP_002030800.1 1492833..1493435(-) (recU) [Bacillus mycoides strain PAMC 29538]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGACACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GKC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625