Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   Q7W68_RS06320 Genome accession   NZ_CP132065
Coordinates   1237063..1237386 (-) Length   107 a.a.
NCBI ID   WP_002011473.1    Uniprot ID   A0A366GDN4
Organism   Bacillus mycoides strain PAMC 29538     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1232063..1242386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W68_RS06295 - 1232246..1233532 (+) 1287 WP_305927217.1 D-alanyl-D-alanine carboxypeptidase family protein -
  Q7W68_RS06300 sipW 1233729..1234298 (+) 570 WP_002064334.1 signal peptidase I SipW -
  Q7W68_RS06305 - 1234363..1234950 (+) 588 WP_002030432.1 CalY family protein -
  Q7W68_RS06310 - 1235112..1235945 (+) 834 WP_305927218.1 DUF4047 domain-containing protein -
  Q7W68_RS06315 calY 1236387..1236980 (+) 594 WP_305927219.1 biofilm matrix protein CalY -
  Q7W68_RS06320 sinR 1237063..1237386 (-) 324 WP_002011473.1 helix-turn-helix domain-containing protein Regulator
  Q7W68_RS06325 - 1237466..1237600 (-) 135 WP_002011474.1 anti-repressor SinI family protein -
  Q7W68_RS06330 inhA1 1237943..1240330 (+) 2388 WP_305927220.1 M6 family metalloprotease immune inhibitor InhA1 -
  Q7W68_RS06335 - 1240501..1241868 (+) 1368 WP_305927221.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12304.07 Da        Isoelectric Point: 7.2050

>NTDB_id=867141 Q7W68_RS06320 WP_002011473.1 1237063..1237386(-) (sinR) [Bacillus mycoides strain PAMC 29538]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTTESHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=867141 Q7W68_RS06320 WP_002011473.1 1237063..1237386(-) (sinR) [Bacillus mycoides strain PAMC 29538]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAGGGCATTTCATTAACAGAACTCGCCGAAAAAGCTGGTGTCGC
TAAATCTTACATTAGTTCTATAGAACGGAATTTACAAAAAAACCCTTCTATTCAGTTTCTTGAAAAAATTGCAGCTGTTC
TACAAATTCCAGTTGATACTTTACTTCACGATGAAACAACAACGGAAAGTCATCTAGACTCCGAATGGACACAGCTCGTT
AAAGATGCGATGAGCTCTGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTCGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GDN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682