Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   Q8W18_RS11790 Genome accession   NZ_CP132058
Coordinates   2308977..2309747 (-) Length   256 a.a.
NCBI ID   WP_306010895.1    Uniprot ID   -
Organism   Bacillus pumilus strain F12-21     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2303977..2314747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8W18_RS11770 (Q8W18_11770) - 2304069..2304890 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  Q8W18_RS11775 (Q8W18_11775) - 2304916..2305554 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  Q8W18_RS11780 (Q8W18_11780) glyS 2305722..2307767 (-) 2046 WP_306010894.1 glycine--tRNA ligase subunit beta -
  Q8W18_RS11785 (Q8W18_11785) glyQ 2307760..2308647 (-) 888 WP_012010611.1 glycine--tRNA ligase subunit alpha -
  Q8W18_RS11790 (Q8W18_11790) recO 2308977..2309747 (-) 771 WP_306010895.1 DNA repair protein RecO Machinery gene
  Q8W18_RS11795 (Q8W18_11795) - 2309783..2309926 (-) 144 WP_003217288.1 YqzL family protein -
  Q8W18_RS11800 (Q8W18_11800) era 2310075..2310980 (-) 906 WP_058014648.1 GTPase Era -
  Q8W18_RS11805 (Q8W18_11805) - 2310973..2311371 (-) 399 WP_003217296.1 cytidine deaminase -
  Q8W18_RS11810 (Q8W18_11810) - 2311485..2311871 (-) 387 WP_044139413.1 diacylglycerol kinase family protein -
  Q8W18_RS11815 (Q8W18_11815) ybeY 2311849..2312328 (-) 480 WP_061408615.1 rRNA maturation RNase YbeY -
  Q8W18_RS11820 (Q8W18_11820) - 2312329..2314440 (-) 2112 WP_370339280.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29256.98 Da        Isoelectric Point: 8.4348

>NTDB_id=867055 Q8W18_RS11790 WP_306010895.1 2308977..2309747(-) (recO) [Bacillus pumilus strain F12-21]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSIGLGTLQQGEMIESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMGGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=867055 Q8W18_RS11790 WP_306010895.1 2308977..2309747(-) (recO) [Bacillus pumilus strain F12-21]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGTGCGAAAAAATCAAACAGCCGACTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAATAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGAACC
ATTCGGGAGGATTTATTCTTGACCGCATATGCCGCATATATGACAGAGTTACTCGATAAAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTCCTGCTTCAATCTCTGCGTCATCTGAATGAAGGCACAGATGCTGATATTATCTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGAATGAAGCCCGAACTGGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTTCATTTCTCGATTAGAGACAACGGCTTTATTTGCCAAAATTGCTTTTCTAAAGATCCGTATAAACTGCCCTTATC
CCCAGCAGCTGCAAGGCTGCTCCGTTTATTTCATTATTTTGATTTATCAAGGCTCGGTCAGGTGGATGTGAAACCGCAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCACTACTATGAAGAGTATTCAGGCCTTTATTTGAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTCATGGGCGGGGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758