Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   Q8W18_RS10300 Genome accession   NZ_CP132058
Coordinates   2045977..2046588 (+) Length   203 a.a.
NCBI ID   WP_058014838.1    Uniprot ID   -
Organism   Bacillus pumilus strain F12-21     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2040977..2051588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8W18_RS10260 (Q8W18_10260) - 2041145..2042263 (+) 1119 WP_235567057.1 NADH-dependent flavin oxidoreductase -
  Q8W18_RS10265 (Q8W18_10265) - 2042314..2042820 (-) 507 WP_144462821.1 PTS glucose transporter subunit IIA -
  Q8W18_RS10270 (Q8W18_10270) - 2042988..2043407 (+) 420 WP_003215994.1 Hsp20/alpha crystallin family protein -
  Q8W18_RS10275 (Q8W18_10275) - 2043428..2043880 (-) 453 WP_058014840.1 YppG family protein -
  Q8W18_RS10280 (Q8W18_10280) - 2043987..2044358 (-) 372 WP_323640844.1 YppE family protein -
  Q8W18_RS10285 (Q8W18_10285) - 2044416..2044649 (-) 234 WP_223251159.1 DUF5446 family protein -
  Q8W18_RS10290 (Q8W18_10290) sspM 2044846..2044950 (+) 105 WP_012010346.1 acid-soluble spore protein SspM -
  Q8W18_RS10295 (Q8W18_10295) - 2044974..2045930 (-) 957 WP_169057109.1 DUF2515 domain-containing protein -
  Q8W18_RS10300 (Q8W18_10300) recU 2045977..2046588 (+) 612 WP_058014838.1 Holliday junction resolvase RecU Machinery gene
  Q8W18_RS10305 (Q8W18_10305) - 2046632..2049343 (+) 2712 WP_306010795.1 PBP1A family penicillin-binding protein -
  Q8W18_RS10310 (Q8W18_10310) - 2049378..2049887 (-) 510 WP_180310606.1 YpoC family protein -
  Q8W18_RS10315 (Q8W18_10315) nth 2049884..2050546 (-) 663 WP_169057106.1 endonuclease III -
  Q8W18_RS10320 (Q8W18_10320) - 2050564..2051268 (-) 705 WP_034661036.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23270.40 Da        Isoelectric Point: 8.9930

>NTDB_id=867049 Q8W18_RS10300 WP_058014838.1 2045977..2046588(+) (recU) [Bacillus pumilus strain F12-21]
MIRYPNGKSYQPIQPIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
LNGRKSISKDELVEAGHLMTLGYSPRIDYIKVVETLHFSDESE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=867049 Q8W18_RS10300 WP_058014838.1 2045977..2046588(+) (recU) [Bacillus pumilus strain F12-21]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACCAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGACTTAAATGAAACCAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCCGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGCGCTGCTGTGATCAAAGAAGCCTAC
TTTAAACAATCATCCACAACAGACTATAATGGAGTGTACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCATTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTTTGGGAGCGGCAGAAG
CTAAACGGCCGAAAATCCATTAGTAAAGACGAATTAGTGGAAGCAGGCCACTTAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGTGAGTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

99.507

0.724