Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   Q8W18_RS07175 Genome accession   NZ_CP132058
Coordinates   1424114..1424695 (+) Length   193 a.a.
NCBI ID   WP_044142051.1    Uniprot ID   A0AB34QPU5
Organism   Bacillus pumilus strain F12-21     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1419114..1429695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8W18_RS07145 (Q8W18_07145) dapD 1419236..1419946 (+) 711 WP_003212204.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  Q8W18_RS07150 (Q8W18_07150) - 1420028..1421158 (+) 1131 WP_306012085.1 N-acetyldiaminopimelate deacetylase -
  Q8W18_RS07155 (Q8W18_07155) - 1421209..1421451 (+) 243 WP_003211408.1 YkuS family protein -
  Q8W18_RS07160 (Q8W18_07160) - 1421481..1422287 (-) 807 WP_169056421.1 mechanosensitive ion channel family protein -
  Q8W18_RS07165 (Q8W18_07165) ahpA 1422560..1423102 (+) 543 WP_003211758.1 biofilm-specific peroxidase AhpA -
  Q8W18_RS07170 (Q8W18_07170) - 1423185..1423643 (+) 459 WP_003211884.1 TlpA disulfide reductase family protein -
  Q8W18_RS07175 (Q8W18_07175) rok 1424114..1424695 (+) 582 WP_044142051.1 transcriptional regulator Rok Regulator
  Q8W18_RS07180 (Q8W18_07180) - 1424746..1425663 (-) 918 WP_306012086.1 sigmaE regulated sporulation protein -
  Q8W18_RS07185 (Q8W18_07185) - 1425748..1426329 (+) 582 WP_306012087.1 molybdenum cofactor guanylyltransferase -
  Q8W18_RS07190 (Q8W18_07190) - 1426359..1427375 (+) 1017 WP_144462146.1 thiazole biosynthesis adenylyltransferase ThiF -
  Q8W18_RS07195 (Q8W18_07195) glp 1427385..1428662 (+) 1278 WP_306012088.1 gephyrin-like molybdotransferase Glp -
  Q8W18_RS07200 (Q8W18_07200) mobB 1428644..1429168 (+) 525 WP_306012089.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  Q8W18_RS07205 (Q8W18_07205) - 1429165..1429656 (+) 492 WP_169056427.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21788.74 Da        Isoelectric Point: 9.7309

>NTDB_id=867042 Q8W18_RS07175 WP_044142051.1 1424114..1424695(+) (rok) [Bacillus pumilus strain F12-21]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQP
PAQSQSNSASTLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=867042 Q8W18_RS07175 WP_044142051.1 1424114..1424695(+) (rok) [Bacillus pumilus strain F12-21]
TTGTTTAATGAGAGGGAAGCGTTACGATTACGATTGGAACAATTAAACGAAGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGAGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AGGTGCGTACAGAAAGAAAAACGGATTCACTGCCTGTATTAGCTGAACTGGCTGCACAAGAAATGAGAAGCTACCAGCCG
CCTGCACAATCACAATCAAATTCTGCATCAACTTTAGGAACAGGACAGCTAAACGGTGCACCTGTAGGTATTCCTGAAGG
ATCTACAAGACGCAGAAGAGGCACAGCCCGCCCTGGTTCAAAGGCAGCTAAGCTTCGTGAAGCTGCGATTAAAACGTTAA
AGCGTCATAATGCAGCGATTAAAAGCTCTGAACTTCAAAAAGAAATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATG
ACAACGTTTATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAGCCATATCGCGGACAGTATATTTTAGAAGGCGA
TATTCAAACAGAAGACGAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.053

98.446

0.798