Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   Q8W18_RS07060 Genome accession   NZ_CP132058
Coordinates   1405724..1406185 (-) Length   153 a.a.
NCBI ID   WP_012009774.1    Uniprot ID   A0AAE4B719
Organism   Bacillus pumilus strain F12-21     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1400724..1411185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8W18_RS07035 (Q8W18_07035) - 1401330..1402214 (+) 885 WP_268497992.1 cation diffusion facilitator family transporter -
  Q8W18_RS07040 (Q8W18_07040) - 1402277..1402429 (-) 153 WP_162839369.1 hypothetical protein -
  Q8W18_RS07045 (Q8W18_07045) - 1402732..1403271 (+) 540 WP_058014124.1 RDD family protein -
  Q8W18_RS07050 (Q8W18_07050) - 1403397..1404707 (+) 1311 WP_306012078.1 MFS transporter -
  Q8W18_RS07055 (Q8W18_07055) - 1404781..1405689 (+) 909 WP_306012079.1 chemotaxis protein -
  Q8W18_RS07060 (Q8W18_07060) kre 1405724..1406185 (-) 462 WP_012009774.1 YkyB family protein Regulator
  Q8W18_RS07065 (Q8W18_07065) - 1406695..1406910 (-) 216 WP_003211341.1 hypothetical protein -
  Q8W18_RS07070 (Q8W18_07070) - 1407320..1408597 (-) 1278 WP_058014121.1 MFS transporter -
  Q8W18_RS07075 (Q8W18_07075) - 1408671..1409168 (-) 498 WP_306012080.1 L,D-transpeptidase family protein -
  Q8W18_RS07080 (Q8W18_07080) - 1409325..1410182 (-) 858 WP_306012081.1 metallophosphoesterase -
  Q8W18_RS07085 (Q8W18_07085) fadH 1410320..1411084 (+) 765 WP_058014118.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17741.33 Da        Isoelectric Point: 10.2452

>NTDB_id=867041 Q8W18_RS07060 WP_012009774.1 1405724..1406185(-) (kre) [Bacillus pumilus strain F12-21]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQLLQTYVGLKEKPTATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=867041 Q8W18_RS07060 WP_012009774.1 1405724..1406185(-) (kre) [Bacillus pumilus strain F12-21]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAGCTGCTTCAAACGTATGTCGGTTTAAAAGAAAAACCTACCGCCA
CAAAACAAAAATCACATTATACAAAGCCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

76.623

100

0.771