Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   Q8W18_RS04520 Genome accession   NZ_CP132058
Coordinates   921941..922732 (+) Length   263 a.a.
NCBI ID   WP_169057377.1    Uniprot ID   -
Organism   Bacillus pumilus strain F12-21     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 916941..927732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8W18_RS04485 (Q8W18_04485) - 917027..917575 (+) 549 WP_058015766.1 thioredoxin family protein -
  Q8W18_RS04490 (Q8W18_04490) - 917913..918380 (+) 468 WP_058015767.1 thiol-disulfide oxidoreductase DCC family protein -
  Q8W18_RS04495 (Q8W18_04495) - 918417..919673 (-) 1257 WP_061407125.1 transcriptional regulator -
  Q8W18_RS04500 (Q8W18_04500) - 919946..920533 (+) 588 WP_058015770.1 nitroreductase -
  Q8W18_RS04505 (Q8W18_04505) - 920570..920725 (-) 156 WP_012009317.1 YfhD family protein -
  Q8W18_RS04510 (Q8W18_04510) - 920787..920897 (-) 111 WP_017358836.1 YfhE family protein -
  Q8W18_RS04515 (Q8W18_04515) - 920950..921846 (-) 897 WP_169057376.1 TIGR01777 family oxidoreductase -
  Q8W18_RS04520 (Q8W18_04520) recX 921941..922732 (+) 792 WP_169057377.1 recombination regulator RecX Regulator
  Q8W18_RS04525 (Q8W18_04525) - 922736..923050 (+) 315 WP_169057378.1 YfhH family protein -
  Q8W18_RS04530 (Q8W18_04530) - 923073..923246 (-) 174 WP_003217811.1 YpzG family protein -
  Q8W18_RS04535 (Q8W18_04535) - 923272..923421 (-) 150 WP_003217849.1 small, acid-soluble spore protein K -
  Q8W18_RS04540 (Q8W18_04540) - 923538..923810 (+) 273 WP_003217809.1 YfhJ family protein -
  Q8W18_RS04545 (Q8W18_04545) - 924100..925083 (+) 984 WP_061407137.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30698.09 Da        Isoelectric Point: 6.5243

>NTDB_id=867028 Q8W18_RS04520 WP_169057377.1 921941..922732(+) (recX) [Bacillus pumilus strain F12-21]
MPYITKISAQKNNTERVNIFLDEKYAFSVDLDVLVQHDLKKGKELDEADIIDIQFGDAVKKGFQQAVDYLSYRMRSVKEV
TDYLTKKEIPAPAISEIIHKLKHYKYVNDLEFAEAYISTHRKTNSKGPSVLKKELKLKGIDDDNIEQALSQYPDDLQLEE
AVKQVQKLVRKEKNRSAKEIEQRIKLQLQRKGFSFEVIDKALQEAYDGQEEEKEEEALLYMMEKAKRKVGYDGSFEKRMK
VKQFLFRKGFDLDTIDQVLDKGE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=867028 Q8W18_RS04520 WP_169057377.1 921941..922732(+) (recX) [Bacillus pumilus strain F12-21]
ATGCCCTATATTACAAAAATCTCCGCTCAAAAAAACAATACAGAGCGGGTAAACATCTTTCTTGATGAAAAGTACGCGTT
TAGCGTGGATCTAGATGTGCTCGTCCAGCACGATTTGAAAAAGGGAAAAGAGCTGGACGAAGCCGATATCATCGACATTC
AATTCGGTGATGCTGTGAAAAAAGGATTTCAGCAGGCCGTCGATTATTTATCCTACCGAATGAGATCGGTGAAAGAAGTC
ACCGATTACTTGACGAAAAAAGAAATCCCGGCACCTGCCATTAGTGAAATTATACACAAATTAAAGCATTACAAGTATGT
AAATGATCTTGAATTTGCAGAAGCCTATATCAGCACCCACCGTAAAACGAATAGCAAAGGGCCGTCTGTCCTGAAAAAAG
AGCTAAAGCTCAAAGGGATAGATGATGACAACATTGAACAAGCACTATCGCAATATCCTGATGACTTACAGCTGGAGGAA
GCTGTGAAGCAGGTTCAGAAGCTTGTGAGAAAAGAAAAAAATCGTTCCGCAAAAGAGATCGAGCAGCGCATCAAGCTGCA
GCTGCAGCGAAAAGGGTTTTCGTTTGAGGTCATTGATAAAGCCCTTCAAGAAGCCTATGATGGACAAGAAGAGGAAAAGG
AAGAAGAAGCGCTCCTTTATATGATGGAGAAGGCAAAACGCAAGGTAGGATACGACGGATCATTTGAAAAGAGGATGAAG
GTGAAGCAATTTTTATTCAGAAAAGGCTTTGATCTCGACACAATTGATCAAGTTTTAGACAAAGGGGAATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

63.118

100

0.631