Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   Q8W18_RS02265 Genome accession   NZ_CP132058
Coordinates   402620..403048 (-) Length   142 a.a.
NCBI ID   WP_169057407.1    Uniprot ID   -
Organism   Bacillus pumilus strain F12-21     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 397620..408048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8W18_RS02235 (Q8W18_02235) - 397775..398104 (+) 330 WP_058015304.1 YckD family protein -
  Q8W18_RS02240 (Q8W18_02240) - 398154..398918 (-) 765 WP_306011688.1 MBL fold metallo-hydrolase -
  Q8W18_RS02245 (Q8W18_02245) - 399034..399450 (+) 417 WP_169057411.1 Lrp/AsnC family transcriptional regulator -
  Q8W18_RS02250 (Q8W18_02250) - 399480..400286 (+) 807 WP_306011689.1 aminoglycoside N(3)-acetyltransferase -
  Q8W18_RS02255 (Q8W18_02255) - 400288..400674 (-) 387 WP_306011690.1 competence protein ComJ -
  Q8W18_RS02260 (Q8W18_02260) - 400795..402492 (-) 1698 WP_306011691.1 methyl-accepting chemotaxis protein -
  Q8W18_RS02265 (Q8W18_02265) nucA/comI 402620..403048 (-) 429 WP_169057407.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  Q8W18_RS02270 (Q8W18_02270) - 403416..405485 (+) 2070 WP_306011692.1 hydantoinase/oxoprolinase family protein -
  Q8W18_RS02275 (Q8W18_02275) - 405475..407460 (+) 1986 WP_306011693.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15884.82 Da        Isoelectric Point: 5.5491

>NTDB_id=867026 Q8W18_RS02265 WP_169057407.1 402620..403048(-) (nucA/comI) [Bacillus pumilus strain F12-21]
MKLLKIILLLLLIIVGVATGYIQLEQGKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSVCTIDRKHSDEQREQS
LHGIPTKRGYDRDEWPMAMCKEGGTGASVKYISPSDNRGAGSWVGHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=867026 Q8W18_RS02265 WP_169057407.1 402620..403048(-) (nucA/comI) [Bacillus pumilus strain F12-21]
ATGAAACTTCTTAAAATCATTCTCTTGCTTTTACTGATCATCGTTGGTGTAGCAACAGGCTATATTCAGCTGGAGCAAGG
TAAACAAGAGACGACGAATTCATCTTATGACAAAACGATTCACTTCCCATCAGATCGTTACCCCGAAACCGCGAAGCACA
TAGAAGAGGCAATTGATGAGGGCCATTCATCCGTATGTACAATTGACCGTAAACATAGCGATGAACAAAGAGAACAATCA
CTTCATGGCATCCCAACAAAGCGCGGATATGATCGGGACGAATGGCCGATGGCGATGTGTAAGGAAGGAGGAACAGGAGC
TTCAGTCAAATACATTAGTCCTTCAGATAATAGAGGAGCAGGCTCATGGGTCGGTCATCAATTATCAGATGATCCTGACG
GCACAAGGATACAATTTATCATCGATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

74.528

74.648

0.556