Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   Q8W18_RS00240 Genome accession   NZ_CP132058
Coordinates   43907..44197 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus pumilus strain F12-21     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 38907..49197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8W18_RS00200 (Q8W18_00200) - 38942..39271 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  Q8W18_RS00205 (Q8W18_00205) - 39284..39724 (+) 441 WP_058015827.1 YaaR family protein -
  Q8W18_RS00210 (Q8W18_00210) holB 39736..40725 (+) 990 WP_169057684.1 DNA polymerase III subunit delta' -
  Q8W18_RS00215 (Q8W18_00215) - 40728..41555 (+) 828 WP_003217932.1 stage 0 sporulation family protein -
  Q8W18_RS00220 (Q8W18_00220) yabA 41570..41923 (+) 354 WP_003217957.1 DNA replication initiation control protein YabA -
  Q8W18_RS00225 (Q8W18_00225) - 41979..42722 (+) 744 WP_044140390.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  Q8W18_RS00230 (Q8W18_00230) - 42709..43005 (+) 297 WP_003217970.1 GIY-YIG nuclease family protein -
  Q8W18_RS00235 (Q8W18_00235) rsmI 42983..43861 (+) 879 WP_306011531.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  Q8W18_RS00240 (Q8W18_00240) abrB 43907..44197 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  Q8W18_RS00245 (Q8W18_00245) metG 44718..46718 (+) 2001 WP_306011532.1 methionine--tRNA ligase -
  Q8W18_RS00250 (Q8W18_00250) - 46800..47567 (+) 768 WP_306011533.1 TatD family hydrolase -
  Q8W18_RS00255 (Q8W18_00255) - 47812..49014 (+) 1203 WP_306011534.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=867023 Q8W18_RS00240 WP_087975202.1 43907..44197(-) (abrB) [Bacillus pumilus strain F12-21]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=867023 Q8W18_RS00240 WP_087975202.1 43907..44197(-) (abrB) [Bacillus pumilus strain F12-21]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938