Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHP63_RS05185 Genome accession   NZ_CP148170
Coordinates   1001211..1001759 (+) Length   182 a.a.
NCBI ID   WP_002890071.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323HCJ0025     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 996211..1006759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP63_RS05150 (WHP63_05150) - 996400..996826 (+) 427 Protein_992 GNAT family N-acetyltransferase -
  WHP63_RS05155 (WHP63_05155) - 996890..997510 (+) 621 WP_002899480.1 NAD(P)H-dependent oxidoreductase -
  WHP63_RS05160 (WHP63_05160) - 997510..998115 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  WHP63_RS05165 (WHP63_05165) pgsA 998240..998776 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WHP63_RS05170 (WHP63_05170) rseP 998773..999879 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  WHP63_RS05175 (WHP63_05175) - 999872..1000738 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  WHP63_RS05180 (WHP63_05180) rpsF 1000825..1001199 (+) 375 WP_002890070.1 30S ribosomal protein S6 -
  WHP63_RS05185 (WHP63_05185) ssb 1001211..1001759 (+) 549 WP_002890071.1 single-stranded DNA-binding protein Machinery gene
  WHP63_RS05190 (WHP63_05190) rpsR 1001770..1002030 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  WHP63_RS05195 (WHP63_05195) lon 1002090..1004465 (-) 2376 WP_002853487.1 endopeptidase La -
  WHP63_RS05200 (WHP63_05200) - 1004482..1005129 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  WHP63_RS05205 (WHP63_05205) fliW 1005290..1005679 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  WHP63_RS05210 (WHP63_05210) proC 1005679..1006410 (+) 732 WP_002869050.1 pyrroline-5-carboxylate reductase Machinery gene
  WHP63_RS05215 (WHP63_05215) ctsT 1006407..1006709 (+) 303 WP_002855822.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20594.53 Da        Isoelectric Point: 5.0431

>NTDB_id=866859 WHP63_RS05185 WP_002890071.1 1001211..1001759(+) (ssb) [Campylobacter jejuni strain Z1323HCJ0025]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLAKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNVPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=866859 WHP63_RS05185 WP_002890071.1 1001211..1001759(+) (ssb) [Campylobacter jejuni strain Z1323HCJ0025]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTGCAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGTTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363