Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QFX53_RS06180 Genome accession   NZ_CP132031
Coordinates   1183249..1183695 (+) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.3a     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1178249..1188695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX53_RS06145 - 1178743..1178946 (+) 204 WP_000087561.1 YqgQ family protein -
  QFX53_RS06150 - 1178943..1179929 (+) 987 WP_000161314.1 ROK family glucokinase -
  QFX53_RS06155 - 1179929..1180258 (+) 330 WP_304984508.1 MTH1187 family thiamine-binding protein -
  QFX53_RS06160 - 1180255..1180878 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QFX53_RS06165 comGA 1180930..1181904 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  QFX53_RS06170 comGB 1181876..1182946 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  QFX53_RS06175 comGC 1182960..1183271 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QFX53_RS06180 comGD 1183249..1183695 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  QFX53_RS06185 comGE 1183682..1183981 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  QFX53_RS06190 comGF 1183899..1184396 (+) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  QFX53_RS06195 - 1184493..1184639 (+) 147 WP_001789879.1 hypothetical protein -
  QFX53_RS06200 - 1184629..1185153 (+) 525 WP_001015119.1 shikimate kinase -
  QFX53_RS06205 gcvT 1185312..1186403 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  QFX53_RS06210 gcvPA 1186423..1187769 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=866804 QFX53_RS06180 WP_001788899.1 1183249..1183695(+) (comGD) [Staphylococcus aureus strain 2.3a]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=866804 QFX53_RS06180 WP_001788899.1 1183249..1183695(+) (comGD) [Staphylococcus aureus strain 2.3a]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1